View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3327_high_12 (Length: 418)
Name: NF3327_high_12
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3327_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 71 - 403
Target Start/End: Complemental strand, 131234 - 130900
Alignment:
| Q |
71 |
catgtgtcaatgttgcattacaaagcggtttatgccactgacattgctgctcgggcttgaagctactgtgtccttgccatgaccatgaccatgacctgtt |
170 |
Q |
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| T |
131234 |
catgtgtcaacgttgcattacaaagcgatttatgccactgacattgctgctcgggcttgaagctactgtgtccttgccatgaccatgacc------tgtt |
131141 |
T |
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| Q |
171 |
tcatattgctcgcgccttcgtcgaacctagaataaaccaccaagctagaaaattctcacctagatctctgaaaaatcatccacaagctgcatggacggcc |
270 |
Q |
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| T |
131140 |
tcatattgctcgcgccttcgtcgaacctagaataaaccaccaagctagaaaattctcacctagatctctgaaaaatcatccacaagctgcatggacggcc |
131041 |
T |
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| Q |
271 |
gcacatacaagggtatgtgggccttgg-cctcacaactttagg-----------aagaaaaacaatacttatatatattatggaaagaaagnnnnnnnga |
358 |
Q |
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| T |
131040 |
gcacatacaagggtatgtgggccttggtcctcacaactttaggaagaaaaaaaaaagaaaaacaatacttatatatattatggaaaaaaa----aaaaaa |
130945 |
T |
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| Q |
359 |
agaagataatgatagtgaagtttaattaagttattgagatctaca |
403 |
Q |
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| T |
130944 |
aggagataatgatagtgaagtttaattaagttattgagatctaca |
130900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 132388 - 132326
Alignment:
| Q |
12 |
atcatcactcgcacactccaaacgattgcacccaacaacaaaaacatttgtagtagcggcatg |
74 |
Q |
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| T |
132388 |
atcatcactcgcacactccaaacgattgcacccaacaacaaaaacatttgtagtagcggcatg |
132326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 348
Target Start/End: Original strand, 4711953 - 4712033
Alignment:
| Q |
267 |
ggccgcacatacaagggtatgtgggccttg-gcctcacaactttaggaagaaaaacaatacttatatatattatggaaagaaa |
348 |
Q |
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| T |
4711953 |
ggccccacatacaaaggtatgtgggccttgatcctcacta-tttaggaa-aaaaataatacctatatatattatgaaaagaaa |
4712033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 30861392 - 30861352
Alignment:
| Q |
259 |
gcatggacggccgcacatacaagggtatgtgggccttggcc |
299 |
Q |
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| T |
30861392 |
gcatgcacggccccacatccaagggtatgtgggccttggcc |
30861352 |
T |
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