View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3327_high_14 (Length: 403)

Name: NF3327_high_14
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3327_high_14
NF3327_high_14
[»] chr5 (7 HSPs)
chr5 (7-393)||(2996434-2996820)
chr5 (114-247)||(8426140-8426273)
chr5 (7-71)||(37375281-37375345)
chr5 (114-247)||(27883616-27883749)
chr5 (114-247)||(37375433-37375566)
chr5 (7-71)||(8426361-8426425)
chr5 (7-71)||(27883464-27883528)
[»] chr7 (8 HSPs)
chr7 (114-281)||(45120350-45120517)
chr7 (114-248)||(8996852-8996986)
chr7 (114-247)||(12778701-12778834)
chr7 (7-71)||(12778922-12778986)
chr7 (123-247)||(12783560-12783684)
chr7 (7-71)||(12783781-12783845)
chr7 (9-71)||(8997074-8997136)
chr7 (140-248)||(4103239-4103347)
[»] scaffold0025 (1 HSPs)
scaffold0025 (71-243)||(18162-18339)
[»] chr2 (8 HSPs)
chr2 (114-281)||(21397542-21397709)
chr2 (114-247)||(41917745-41917878)
chr2 (114-247)||(28663774-28663907)
chr2 (114-247)||(37822608-37822741)
chr2 (7-71)||(28663995-28664059)
chr2 (7-71)||(37822829-37822893)
chr2 (9-71)||(21397392-21397454)
chr2 (7-71)||(41917966-41918030)
[»] chr8 (5 HSPs)
chr8 (114-247)||(7824021-7824154)
chr8 (114-247)||(25216118-25216251)
chr8 (7-71)||(25216339-25216403)
chr8 (140-247)||(25212367-25212474)
chr8 (7-52)||(30327810-30327855)
[»] scaffold0499 (2 HSPs)
scaffold0499 (114-248)||(12216-12351)
scaffold0499 (9-71)||(12066-12128)
[»] scaffold0090 (2 HSPs)
scaffold0090 (114-247)||(46538-46671)
scaffold0090 (7-71)||(46759-46823)
[»] chr4 (4 HSPs)
chr4 (114-247)||(35858440-35858573)
chr4 (114-247)||(49784430-49784563)
chr4 (7-71)||(35858288-35858352)
chr4 (7-71)||(49784651-49784715)
[»] chr3 (2 HSPs)
chr3 (114-247)||(35201-35334)
chr3 (7-71)||(35049-35113)


Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 7 - 393
Target Start/End: Complemental strand, 2996820 - 2996434
Alignment:
Q  7 atgaggccatttttggtgcatattaaaaacaaatattctccaaacaacctcactaggtgaaacattaaatttgtcatggttttcaccatcaactaacatt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2996820 atgaggccatttttggtgcatattaaaaacaaatattctccaaacaacctcactaggtgaaacattaaatttgtcatggttttcaccatcaactaacatt 2996721  T
Q  107 gtcaccctatcaggacctttgttcatatacttaaaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatca 206  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2996720 gtcaccctatcaggacctttgttcatatacttaaaaagatacttgatggagttagacttgatacaatatttcacgctaacaggaccttcataactaatca 2996621  T
Q  207 taagatgttgattgtatgagatgacaaaacgattatccaatttaacaccttatttctcaacatgtataccaaaattgtgacatttatatatgggttatct 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2996620 taagatgttgattgtatgagatgacaaaacgattatccaatttaacaccctatttctcaacatgtataccaaaattgtgacatttatatatgggttatct 2996521  T
Q  307 aggagactagttctagtcaatatataagcgaacacatacaannnnnnncatgtagatagatgagattaaagactttgtatctttctt 393  Q
    |||||||||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||||||||||||    
T  2996520 aggagactagttctagtcaatatataagcgaacacagacaatttttttcatgtagatagatgagattaaagactttgtatctttctt 2996434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 247
Target Start/End: Complemental strand, 8426273 - 8426140
Alignment:
Q  114 tatcaggacctttgttcatatacttaaaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatg 213  Q
    |||||||  |||||||||  || || |||||||| ||||||||||| |||||| ||||| ||| |||  | ||| ||||| | || ||||| | ||||||    
T  8426273 tatcagggactttgttcacgtatttgaaaaggtacttgatggagttggatttgttacaacattccacatttacatgacctccgtatctaatgagaagatg 8426174  T
Q  214 ttgattgtatgagatgacaaaacgattatccaat 247  Q
    | ||||||||| || |||| | ||||||||||||    
T  8426173 tggattgtatgggacgacatatcgattatccaat 8426140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 37375281 - 37375345
Alignment:
Q  7 atgaggccatttttggtgcatattaaaaacaaatattctccaaacaacctcactaggtgaaacat 71  Q
    |||||||||||| ||||| |||| |||| ||||||| ||||||||| |||| | |||||||||||    
T  37375281 atgaggccatttatggtgtatatcaaaagcaaatatcctccaaacagcctcgcaaggtgaaacat 37375345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 247
Target Start/End: Original strand, 27883616 - 27883749
Alignment:
Q  114 tatcaggacctttgttcatatacttaaaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatg 213  Q
    |||||||| |||||||||  || || |||||||| |||| |||||| |||||| ||||| ||| |||  | |||  |||| | || ||||| | ||||||    
T  27883616 tatcaggaactttgttcacgtatttgaaaaggtacttgacggagttggatttgttacaacattccacatttacacaacctccgtatctaatgagaagatg 27883715  T
Q  214 ttgattgtatgagatgacaaaacgattatccaat 247  Q
    | ||||||||| || |||| | ||||||||||||    
T  27883716 tggattgtatgggacgacatagcgattatccaat 27883749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 247
Target Start/End: Original strand, 37375433 - 37375566
Alignment:
Q  114 tatcaggacctttgttcatatacttaaaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatg 213  Q
    |||||||  |||||||||  || || |||||||| ||||||||||| |||||| ||||| ||| |||  | ||| ||||| | || ||||| | ||||||    
T  37375433 tatcaggtactttgttcacgtatttgaaaaggtacttgatggagttggatttgttacaacattccacatttacatgacctccgtatctaatgagaagatg 37375532  T
Q  214 ttgattgtatgagatgacaaaacgattatccaat 247  Q
    | ||||||||| ||  ||| | ||||||||||||    
T  37375533 tggattgtatgggacaacatatcgattatccaat 37375566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 8426425 - 8426361
Alignment:
Q  7 atgaggccatttttggtgcatattaaaaacaaatattctccaaacaacctcactaggtgaaacat 71  Q
    |||||||||||| ||||| |||| |||| |||||||  |||||||| |||| | |||||||||||    
T  8426425 atgaggccatttatggtgtatatcaaaagcaaatatcttccaaacagcctcgcaaggtgaaacat 8426361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 27883464 - 27883528
Alignment:
Q  7 atgaggccatttttggtgcatattaaaaacaaatattctccaaacaacctcactaggtgaaacat 71  Q
    |||||||||||| ||||| |||| |||| ||||||| || |||||| |||| | |||||||||||    
T  27883464 atgaggccatttatggtgtatatcaaaagcaaatatccttcaaacagcctcgcaaggtgaaacat 27883528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 114 - 281
Target Start/End: Complemental strand, 45120517 - 45120350
Alignment:
Q  114 tatcaggacctttgttcatatacttaaaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatg 213  Q
    |||||||  |||||||||  || || |||||||| ||||||||||| |||||| ||||||||| |||  | ||| ||||| |||| ||||| | ||||||    
T  45120517 tatcagggtctttgttcacgtattttaaaaggtacttgatggagttggatttgttacaatattccacatttacatgacctccatatctaatgagaagatg 45120418  T
Q  214 ttgattgtatgagatgacaaaacgattatccaatttaacaccttatttctcaacatgtataccaaaat 281  Q
      |||||||||||| |||| |||||||||||||||  || || |  || ||||||||||| |||||||    
T  45120417 cggattgtatgagacgacataacgattatccaattggaccccctgcttgtcaacatgtatcccaaaat 45120350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 114 - 248
Target Start/End: Complemental strand, 8996986 - 8996852
Alignment:
Q  114 tatcaggacctttgttcatatacttaaaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatg 213  Q
    ||||||| ||||||||||  || || |||||||| |||||||||||  ||||| ||||||||| |||  | ||| ||||| | || ||||| | ||||||    
T  8996986 tatcagggcctttgttcaagtatttgaaaaggtacttgatggagttgaatttgttacaatattccacatttacatgacctccgtatctaatgagaagatg 8996887  T
Q  214 ttgattgtatgagatgacaaaacgattatccaatt 248  Q
    | ||||||||| || |||| | |||||||||||||    
T  8996886 tggattgtatgggacgacatagcgattatccaatt 8996852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 247
Target Start/End: Complemental strand, 12778834 - 12778701
Alignment:
Q  114 tatcaggacctttgttcatatacttaaaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatg 213  Q
    |||||||  |||||||||  || || |||||||| ||||||||||| |||||| ||||| ||| |||  | ||| ||||| | || ||||| | ||||||    
T  12778834 tatcagggactttgttcacgtatttgaaaaggtacttgatggagttggatttgttacaacattccacatttacatgacctccgtatctaatgagaagatg 12778735  T
Q  214 ttgattgtatgagatgacaaaacgattatccaat 247  Q
    | ||||||||| || |||| | ||||||||||||    
T  12778734 tggattgtatgggacgacatatcgattatccaat 12778701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 12778986 - 12778922
Alignment:
Q  7 atgaggccatttttggtgcatattaaaaacaaatattctccaaacaacctcactaggtgaaacat 71  Q
    |||||||||||| ||||| |||| |||| ||||||| ||||||||| |||| | |||||||||||    
T  12778986 atgaggccatttatggtgtatatcaaaagcaaatatcctccaaacagcctcgcaaggtgaaacat 12778922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 247
Target Start/End: Complemental strand, 12783684 - 12783560
Alignment:
Q  123 ctttgttcatatacttaaaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatgttgattgta 222  Q
    |||||||||  || || |||||||| ||||||||||| |||||| ||||| ||| |||  | ||| ||||| | || ||||| | ||||||| |||||||    
T  12783684 ctttgttcacgtatttgaaaaggtacttgatggagttggatttgttacaacattacacatttacatgacctccgtatctaatgagaagatgtggattgta 12783585  T
Q  223 tgagatgacaaaacgattatccaat 247  Q
    || || |||| | ||||||||||||    
T  12783584 tgggacgacatatcgattatccaat 12783560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 12783845 - 12783781
Alignment:
Q  7 atgaggccatttttggtgcatattaaaaacaaatattctccaaacaacctcactaggtgaaacat 71  Q
    |||||||||||| ||||| |||| |||| ||||||| ||||||||| |||| | |||||||||||    
T  12783845 atgaggccatttatggtgtatatcaaaagcaaatatcctccaaacagcctcgcaaggtgaaacat 12783781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 8997136 - 8997074
Alignment:
Q  9 gaggccatttttggtgcatattaaaaacaaatattctccaaacaacctcactaggtgaaacat 71  Q
    |||||||||| ||||| |||| |||| ||||||| ||||||||| |||| | |||||||||||    
T  8997136 gaggccatttatggtgtatatcaaaagcaaatatcctccaaacagcctcgcaaggtgaaacat 8997074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 248
Target Start/End: Original strand, 4103239 - 4103347
Alignment:
Q  140 aaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatgttgattgtatgagatgacaaaacgat 239  Q
    |||||||| ||||||||||| |||||| ||||||||| |||  | | | ||||| | || ||||| | ||||||| ||||||||| ||  ||| | ||||    
T  4103239 aaaaggtacttgatggagttggatttgttacaatattccacttttaaatgacctccgtatctaatgagaagatgtggattgtatgggacaacatatcgat 4103338  T
Q  240 tatccaatt 248  Q
    |||||||||    
T  4103339 tatccaatt 4103347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 71 - 243
Target Start/End: Original strand, 18162 - 18339
Alignment:
Q  71 ttaaatttgtcatggttttcaccatcaactaaca------ttgtcaccctatcaggacctttgttcatatacttaaaaaggtatttgatggagttagatt 164  Q
    |||||||||||||| ||||||||||||||| |||      ||||  || |||||| ||||| ||||| ||||||||||||||| |||||||||||||| |    
T  18162 ttaaatttgtcatgattttcaccatcaacttacacctttattgttgccttatcagaaccttagttcacatacttaaaaaggtacttgatggagttagact 18261  T
Q  165 tgatacaatatttcacgctaacaggaccttcataactaatcataagatgttgattgtatgagatgacaaaacgattatc 243  Q
    || | | ||||| || | ||| | ||| ||| || |||||||||||||||  ||| |||||||||  ||||||| ||||    
T  18262 tg-ttcgatattccatgttaagatgacattcttacctaatcataagatgtgtattatatgagatgtgaaaacgactatc 18339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 114 - 281
Target Start/End: Original strand, 21397542 - 21397709
Alignment:
Q  114 tatcaggacctttgttcatatacttaaaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatg 213  Q
    ||||||| ||||||||||  || || |||||||| ||||||||||| |||||| ||||||||| |||  | ||| ||||| | || ||||| | ||||||    
T  21397542 tatcagggcctttgttcacgtatttgaaaaggtacttgatggagttggatttgttacaatattccacatttacatgacctccgtatctaatgagaagatg 21397641  T
Q  214 ttgattgtatgagatgacaaaacgattatccaatttaacaccttatttctcaacatgtataccaaaat 281  Q
    | ||||||||| || |||| | |||||||||||||  || || |  || ||||||||||| |||||||    
T  21397642 tggattgtatgggacgacatagcgattatccaattggaccccctgcttgtcaacatgtatcccaaaat 21397709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 247
Target Start/End: Complemental strand, 41917878 - 41917745
Alignment:
Q  114 tatcaggacctttgttcatatacttaaaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatg 213  Q
    |||||||  |||||||||  || || |||||||| ||||||||||| |||||| ||||| ||| |||  | ||| ||||| | || ||||| | ||||||    
T  41917878 tatcagggactttgttcacgtatttgaaaaggtacttgatggagttggatttgttacaacattccacatttacatgacctccgtatctaatgagaagatg 41917779  T
Q  214 ttgattgtatgagatgacaaaacgattatccaat 247  Q
    | |||||||||||| |||| | ||||||||||||    
T  41917778 tggattgtatgagacgacatatcgattatccaat 41917745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 247
Target Start/End: Complemental strand, 28663907 - 28663774
Alignment:
Q  114 tatcaggacctttgttcatatacttaaaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatg 213  Q
    |||||||  |||||||||  || || |||||||| ||||||||||| |||||| ||||| ||| |||  | ||| ||||| | || ||||| | ||||||    
T  28663907 tatcagggactttgttcacgtatttgaaaaggtacttgatggagttggatttgttacaacattccacatttacatgacctccgtatctaatgagaagatg 28663808  T
Q  214 ttgattgtatgagatgacaaaacgattatccaat 247  Q
    | ||||||||| || |||| | ||||||||||||    
T  28663807 tggattgtatgggacgacatatcgattatccaat 28663774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 247
Target Start/End: Complemental strand, 37822741 - 37822608
Alignment:
Q  114 tatcaggacctttgttcatatacttaaaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatg 213  Q
    |||||||  |||||||||  || || |||||||| ||||||||||| |||||| ||||| ||| |||  | ||| ||||| | || ||||| | ||||||    
T  37822741 tatcagggactttgttcacgtatttgaaaaggtacttgatggagttggatttgttacaacattccacatttacatgacctccgtatctaatgagaagatg 37822642  T
Q  214 ttgattgtatgagatgacaaaacgattatccaat 247  Q
    | ||||||||| || |||| | ||||||||||||    
T  37822641 tggattgtatgggacgacatatcgattatccaat 37822608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 28664059 - 28663995
Alignment:
Q  7 atgaggccatttttggtgcatattaaaaacaaatattctccaaacaacctcactaggtgaaacat 71  Q
    |||||||||||| ||||| |||| |||| ||||||| ||||||||| |||| | |||||||||||    
T  28664059 atgaggccatttatggtgtatatcaaaagcaaatatcctccaaacagcctcgcaaggtgaaacat 28663995  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 37822893 - 37822829
Alignment:
Q  7 atgaggccatttttggtgcatattaaaaacaaatattctccaaacaacctcactaggtgaaacat 71  Q
    |||||||||||| ||||| |||| |||| ||||||| ||||||||| |||| | |||||||||||    
T  37822893 atgaggccatttatggtgtatatcaaaagcaaatatcctccaaacagcctcgcaaggtgaaacat 37822829  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 21397392 - 21397454
Alignment:
Q  9 gaggccatttttggtgcatattaaaaacaaatattctccaaacaacctcactaggtgaaacat 71  Q
    |||||||||| ||||| |||| |||| ||||||| ||||||||| |||| | |||||||||||    
T  21397392 gaggccatttatggtgtatatcaaaagcaaatatcctccaaacagcctcgcaaggtgaaacat 21397454  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 41918030 - 41917966
Alignment:
Q  7 atgaggccatttttggtgcatattaaaaacaaatattctccaaacaacctcactaggtgaaacat 71  Q
    ||||| |||||| ||||| |||| |||| ||||||| ||||||||| |||| | |||||||||||    
T  41918030 atgagaccatttatggtgtatatcaaaagcaaatatcctccaaacagcctcgcaaggtgaaacat 41917966  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 114 - 247
Target Start/End: Original strand, 7824021 - 7824154
Alignment:
Q  114 tatcaggacctttgttcatatacttaaaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatg 213  Q
    |||||||  |||||||||  || || |||||||| ||||||||||| |||||| ||||| ||| |||  | ||| ||||||| || ||||| | ||||||    
T  7824021 tatcagggactttgttcacgtatttgaaaaggtacttgatggagttggatttgttacaacattccacatttacatgaccttcgtatctaatgagaagatg 7824120  T
Q  214 ttgattgtatgagatgacaaaacgattatccaat 247  Q
    | ||||||||| ||||||| | ||||||||||||    
T  7824121 tggattgtatgggatgacatatcgattatccaat 7824154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 247
Target Start/End: Complemental strand, 25216251 - 25216118
Alignment:
Q  114 tatcaggacctttgttcatatacttaaaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatg 213  Q
    |||||||  |||||||||  || || |||||||| ||||||||||| |||||| ||||| ||| |||  | ||| ||||| | || ||||| | ||||||    
T  25216251 tatcagggactttgttcacgtatttgaaaaggtacttgatggagttggatttgttacaacattccacatttacatgacctccgtatctaatgagaagatg 25216152  T
Q  214 ttgattgtatgagatgacaaaacgattatccaat 247  Q
    | ||||||||| || |||| | ||||||||||||    
T  25216151 tggattgtatgggacgacatatcgattatccaat 25216118  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 25216403 - 25216339
Alignment:
Q  7 atgaggccatttttggtgcatattaaaaacaaatattctccaaacaacctcactaggtgaaacat 71  Q
    |||||||||||| ||||| |||| |||| ||||||| ||||||||| |||| | |||||||||||    
T  25216403 atgaggccatttatggtgtatatcaaaagcaaatatcctccaaacagcctcgcaaggtgaaacat 25216339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 140 - 247
Target Start/End: Complemental strand, 25212474 - 25212367
Alignment:
Q  140 aaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatgttgattgtatgagatgacaaaacgat 239  Q
    |||||||| ||||||||||| |||||| ||||| ||| |||  | ||| ||||| | || ||||| | ||||||| ||||||||| || |||| | ||||    
T  25212474 aaaaggtacttgatggagttggatttgttacaacattccacatttacatgacctccgtatctaatgagaagatgtggattgtatgggacgacatatcgat 25212375  T
Q  240 tatccaat 247  Q
    ||||||||    
T  25212374 tatccaat 25212367  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 30327810 - 30327855
Alignment:
Q  7 atgaggccatttttggtgcatattaaaaacaaatattctccaaaca 52  Q
    |||||||||||| ||||| |||| |||| |||||||||||||||||    
T  30327810 atgaggccatttatggtgtatatcaaaagcaaatattctccaaaca 30327855  T

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Target: scaffold0499 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 248
Target Start/End: Original strand, 12216 - 12351
Alignment:
Q  114 tatcaggacctttgttcatatacttaaaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggacctt-cataactaatcataagat 212  Q
    ||||||| ||||||||||  || || |||||||| ||||||||||| |||||| ||||| ||| |||  | ||| |||||| | || ||||| | |||||    
T  12216 tatcagggcctttgttcacgtattttaaaaggtacttgatggagttggatttgttacaacattccacatttacatgaccttccgtatctaatgagaagat 12315  T
Q  213 gttgattgtatgagatgacaaaacgattatccaatt 248  Q
    || ||||||||| || |||| | |||||||||||||    
T  12316 gtggattgtatgggacgacatatcgattatccaatt 12351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 12066 - 12128
Alignment:
Q  9 gaggccatttttggtgcatattaaaaacaaatattctccaaacaacctcactaggtgaaacat 71  Q
    |||||||||| ||||| |||| |||| ||||||| ||||||||| ||| || |||||||||||    
T  12066 gaggccatttatggtgtatatcaaaagcaaatatcctccaaacagcctaacaaggtgaaacat 12128  T

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Target: scaffold0090 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 247
Target Start/End: Complemental strand, 46671 - 46538
Alignment:
Q  114 tatcaggacctttgttcatatacttaaaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatg 213  Q
    |||||||  |||||||||  || || |||||||| ||||||||||| |||||| ||||| ||| |||  | ||| ||||| | || ||||| | ||||||    
T  46671 tatcagggactttgttcacgtatttgaaaaggtacttgatggagttggatttgttacaacattccacatttacatgacctccgtatctaatgagaagatg 46572  T
Q  214 ttgattgtatgagatgacaaaacgattatccaat 247  Q
    | ||||||||| || |||| | ||||||||||||    
T  46571 tggattgtatgggacgacatatcgattatccaat 46538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 46823 - 46759
Alignment:
Q  7 atgaggccatttttggtgcatattaaaaacaaatattctccaaacaacctcactaggtgaaacat 71  Q
    |||||||||||| ||||| |||| |||| ||||||| ||||||||| |||| | |||||||||||    
T  46823 atgaggccatttatggtgtatatcaaaagcaaatatcctccaaacagcctcgcaaggtgaaacat 46759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 247
Target Start/End: Original strand, 35858440 - 35858573
Alignment:
Q  114 tatcaggacctttgttcatatacttaaaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatg 213  Q
    |||||||  |||||||||  || || |||||||| ||||||||||| |||||| ||||| ||| |||  | ||| ||||| | || ||||| | ||||||    
T  35858440 tatcagggactttgttcacgtatttgaaaaggtacttgatggagttggatttgttacaacattccacatttacatgacctccgtatctaatgagaagatg 35858539  T
Q  214 ttgattgtatgagatgacaaaacgattatccaat 247  Q
    | ||||||||| || |||| | ||||||||||||    
T  35858540 tggattgtatgggacgacatatcgattatccaat 35858573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 247
Target Start/End: Complemental strand, 49784563 - 49784430
Alignment:
Q  114 tatcaggacctttgttcatatacttaaaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatg 213  Q
    |||||||  |||||||||  || || |||||||| ||||||||||| |||||| ||||| ||| |||  | ||| ||||| | || ||||| | ||||||    
T  49784563 tatcagggactttgttcacgtatttgaaaaggtacttgatggagttggatttgttacaacattccacatttacatgacctccgtatctaatgagaagatg 49784464  T
Q  214 ttgattgtatgagatgacaaaacgattatccaat 247  Q
    | ||||||||| || |||| | ||||||||||||    
T  49784463 tggattgtatgggacgacatatcgattatccaat 49784430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 35858288 - 35858352
Alignment:
Q  7 atgaggccatttttggtgcatattaaaaacaaatattctccaaacaacctcactaggtgaaacat 71  Q
    |||||||||||| ||||| |||| |||| ||||||| ||||||||| |||| | |||||||||||    
T  35858288 atgaggccatttatggtgtatatcaaaagcaaatatcctccaaacagcctcgcaaggtgaaacat 35858352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 49784715 - 49784651
Alignment:
Q  7 atgaggccatttttggtgcatattaaaaacaaatattctccaaacaacctcactaggtgaaacat 71  Q
    |||||||||||| ||||| |||| |||| ||||||| ||||||||| |||| | |||||||||||    
T  49784715 atgaggccatttatggtgtatatcaaaagcaaatatcctccaaacagcctcgcaaggtgaaacat 49784651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 247
Target Start/End: Original strand, 35201 - 35334
Alignment:
Q  114 tatcaggacctttgttcatatacttaaaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatg 213  Q
    |||||||  |||||||||  || || |||||||| ||||| ||||| |||||| ||||| ||| |||  | ||| ||||| | || ||||| | ||||||    
T  35201 tatcagggactttgttcacgtatttgaaaaggtacttgatagagttggatttgttacaacattccacatttacatgacctccgtatctaatgagaagatg 35300  T
Q  214 ttgattgtatgagatgacaaaacgattatccaat 247  Q
    | ||||||||| || |||| | ||||||||||||    
T  35301 tggattgtatgggacgacatatcgattatccaat 35334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 35049 - 35113
Alignment:
Q  7 atgaggccatttttggtgcatattaaaaacaaatattctccaaacaacctcactaggtgaaacat 71  Q
    ||||||| |||| ||||| |||| |||| ||||||| ||||||||| |||| | |||||||||||    
T  35049 atgaggctatttatggtgtatatcaaaagcaaatatcctccaaacagcctcgcaaggtgaaacat 35113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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