View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3327_high_2 (Length: 708)

Name: NF3327_high_2
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3327_high_2
NF3327_high_2
[»] chr1 (2 HSPs)
chr1 (1-376)||(12455764-12456140)
chr1 (374-699)||(12455174-12455499)
[»] chr4 (2 HSPs)
chr4 (557-613)||(5654501-5654557)
chr4 (559-588)||(30621753-30621782)
[»] chr3 (2 HSPs)
chr3 (557-591)||(21211381-21211415)
chr3 (560-588)||(47132184-47132212)
[»] chr5 (1 HSPs)
chr5 (559-588)||(11596398-11596427)
[»] chr7 (1 HSPs)
chr7 (559-607)||(38134335-38134383)


Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 12456140 - 12455764
Alignment:
Q  1 gtcccttaacaaaacagtttcactgcaaccctattttttctattttagtttcctttcattaatgttggattataaatgtttcggactagcccatgaccca 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12456140 gtcccttaccaaaacagtttcactgcaaccctattttttctattttagtttcctttcattgatgttggattataaatgtttcggactagcccatgaccca 12456041  T
Q  101 tccgaactagatttctgcactacagacccaacccc-tgagcaaaacgtcactgaagatcaacgacagcatgatctcaactaaacattgattcgcatatca 199  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12456040 tccgaactagatttctgcactacagacccaactccatgagcaaaacgtcactgaagatcaacgactgcatgatctcaactaaacattgattcgcatatca 12455941  T
Q  200 cggcgatatacattcctacttataactttctcaacagactttcccaccattttacctcggcagttcagttgtattaggactttccttccaccggaagcaa 299  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  12455940 cggcgatatacattccgacttataactttctcaacagactttcccaccattttacctgggcagttcaattgtattaggactttccttccaccggaagcaa 12455841  T
Q  300 ggtgcccactattcatcatatctctcactcacctcaaattctagttgactcagagtgttggagtgtgtacgaataca 376  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12455840 ggtgcccactattcatcatatctctcactcacctcaaattcttgttgactcagagtgttggagtgtgtacgaataca 12455764  T

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Target: chr1; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 374 - 699
Target Start/End: Complemental strand, 12455499 - 12455174
Alignment:
Q  374 acatctataaattgtaccattcacatattagtttactgtatatgagagactttacatatcacaataaaattgcagactccactatgatcgatgaaggtta 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12455499 acatctataaattgtaccattcacatattagtttactgtatatgagagactttacatatcacaataaaattgcagactccactatgatcaatgaaggtta 12455400  T
Q  474 tcagcagaccaattcacattcaaccacagttttggctatacgccctgtctataactttttacaataatgtaagaagcgtgctagactatgaagcacaaat 573  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12455399 tcagcagaccaattcacattcaaccacagttttggctatacgccctgtctataactttttacaataatgtaagaagcgtgctagactatgaagcacaaat 12455300  T
Q  574 actcctcggattaggagttttccgatgtcgaatatgtatccgtgtccgtgtccatgtatgtgcttcgtaggtcgcatgttcaaatcttgtaaacgggctc 673  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12455299 actcctcggattaggagttttccgatgtcgaatatgtatccgggtccgtgtccatgtatgtgcttcgtaggtcgcatgttcaaatcttgtaaacgggctc 12455200  T
Q  674 tctgcttggaaactaaggctctgtgc 699  Q
    ||||||||||||||||||||||||||    
T  12455199 tctgcttggaaactaaggctctgtgc 12455174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 557 - 613
Target Start/End: Original strand, 5654501 - 5654557
Alignment:
Q  557 gactatgaagcacaaatactcctcggattaggagttttccgatgtcgaatatgtatc 613  Q
    ||||||||||||||||||||| |||||||||| || ||||| ||||| ||| |||||    
T  5654501 gactatgaagcacaaatactcttcggattaggcgtattccggtgtcggatacgtatc 5654557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 588
Target Start/End: Original strand, 30621753 - 30621782
Alignment:
Q  559 ctatgaagcacaaatactcctcggattagg 588  Q
    ||||||||||||||||||||||||||||||    
T  30621753 ctatgaagcacaaatactcctcggattagg 30621782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 557 - 591
Target Start/End: Complemental strand, 21211415 - 21211381
Alignment:
Q  557 gactatgaagcacaaatactcctcggattaggagt 591  Q
    |||||||||||||||| ||||||||||||||||||    
T  21211415 gactatgaagcacaaacactcctcggattaggagt 21211381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 560 - 588
Target Start/End: Complemental strand, 47132212 - 47132184
Alignment:
Q  560 tatgaagcacaaatactcctcggattagg 588  Q
    |||||||||||||||||||||||||||||    
T  47132212 tatgaagcacaaatactcctcggattagg 47132184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 588
Target Start/End: Original strand, 11596398 - 11596427
Alignment:
Q  559 ctatgaagcacaaatactcctcggattagg 588  Q
    ||||||||||||||||||||||||||||||    
T  11596398 ctatgaagcacaaatactcctcggattagg 11596427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 559 - 607
Target Start/End: Original strand, 38134335 - 38134383
Alignment:
Q  559 ctatgaagcacaaatactcctcggattaggagttttccgatgtcgaata 607  Q
    |||||||||||| | ||||||||||||||| || | |||||||||||||    
T  38134335 ctatgaagcacatacactcctcggattaggcgtgtcccgatgtcgaata 38134383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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