View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3327_high_20 (Length: 356)
Name: NF3327_high_20
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3327_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 39556994 - 39556649
Alignment:
| Q |
1 |
caagatcatattagagattcatatatagtaataagttttaggttgtgataaaagtaatacacaagcaagtcgatcctagctagctaacacctcatttgag |
100 |
Q |
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| T |
39556994 |
caagatcatattagagattcatatatagtaataagttttaggttgtgataaaagtaatacacaagcaagtcgatcctagctagctaacacctcatttgag |
39556895 |
T |
|
| Q |
101 |
tcaatatcatcttagtaggcaaagcatagtacataatgagtgataattaaagagattaaattaatcaattaccattacttgatatggaaattcaagaaaa |
200 |
Q |
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| T |
39556894 |
tcaatatcatcttagtaagcaaagcatagtacataatgagtgataattaaagagattaaattaatcaattaccattacttgatatggaaattcaagaaaa |
39556795 |
T |
|
| Q |
201 |
gtgcatggttgagcttgattcatcatttcccttatttgtgctcttctttttcttcttgtaagggatacccctagccttagcttgacactccctaacctct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39556794 |
gtgcatggttgagcttgattcatcatttcccttatttgtgctcttctttttcttcttgtaagggatacccctagccttagcttgacactccctaacctct |
39556695 |
T |
|
| Q |
301 |
ctaagataaacgcgaatagcaccgctcgcaaaaggattagtctctg |
346 |
Q |
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| T |
39556694 |
ctaagataaacgcgaatagcaccgctcgcgaaaggattagtctctg |
39556649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 285
Target Start/End: Original strand, 32002004 - 32002047
Alignment:
| Q |
242 |
tcttctttttcttcttgtaagggatacccctagccttagcttga |
285 |
Q |
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| T |
32002004 |
tcttctttttcttcttgtaaggaattcctctagccttagcttga |
32002047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 320
Target Start/End: Complemental strand, 4863408 - 4863330
Alignment:
| Q |
242 |
tcttctttttcttcttgtaagggatacccctagccttagcttgacactccctaacctctctaagataaacgcgaatagc |
320 |
Q |
| |
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||||||||||||| |||||||||| || |||||||| | |||||||||| |||| || | ||| ||||| |||||||| |
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| T |
4863408 |
tcttctttttctttgtgtaagggatccctctagcctttgattgacactccttaacttcacgaaggtaaacacgaatagc |
4863330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 236 - 341
Target Start/End: Complemental strand, 30942248 - 30942143
Alignment:
| Q |
236 |
ttgtgctcttctttttcttcttgtaagggatacccctagccttagcttgacactccctaacctctctaagataaacgcgaatagcaccgctcgcaaaagg |
335 |
Q |
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||||||| |||||||||||||| ||||| ||||| ||||||||||||||| |||| |||| ||| ||||| || || ||||| | ||| || |||||||| |
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| T |
30942248 |
ttgtgcttttctttttcttcttataaggtatacctctagccttagcttgagactctctaatctccctaaggtagacacgaatggaaccactagcaaaagg |
30942149 |
T |
|
| Q |
336 |
attagt |
341 |
Q |
| |
|
|||||| |
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|
| T |
30942148 |
attagt |
30942143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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