View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3327_high_21 (Length: 346)
Name: NF3327_high_21
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3327_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 104 - 331
Target Start/End: Original strand, 25008616 - 25008843
Alignment:
| Q |
104 |
ggggtttggacttcaaatcatatgaagttataaccccaaggccaacaaaatgaaaagaaagaacacttgttgttagggaaactttatgattaatgatatc |
203 |
Q |
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| T |
25008616 |
ggggtttggacttcaaatcatatgaagttataaccccaaggccaacaaaatgaaaagaaagaacacttgttgttagggaaactttatgattaatgatatc |
25008715 |
T |
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| Q |
204 |
tggtccctgattatgttttcattgttgcataggtatttatataccaaaattgaaatccaattatggactatgatgaagaaacattaggctagataaacgg |
303 |
Q |
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| T |
25008716 |
tggtccctgattatgttttcattgttgcataggtatttatataccaaaattgaaatccaattatggactatgatgaagaaacattaggctagataaacgg |
25008815 |
T |
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| Q |
304 |
gttacttatctttgaccatgaacatttt |
331 |
Q |
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| T |
25008816 |
gttacttatctttgaccatgaacatttt |
25008843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 25008527 - 25008570
Alignment:
| Q |
19 |
tgccaaacaaagcacaaaaagaataatgtcaagtgatcttgcca |
62 |
Q |
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| T |
25008527 |
tgccaaacaaagcacaaaaagaataatgtcaagtgatcttgcca |
25008570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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