View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3327_high_22 (Length: 342)
Name: NF3327_high_22
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3327_high_22 |
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| [»] scaffold1211 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 26378379 - 26378053
Alignment:
| Q |
1 |
gatacagcatttctctataacacgtaaagaaggcactgtaaatcatactttctagtatgcgataaaactaattgatcagcaagttgagttaaactaccat |
100 |
Q |
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| T |
26378379 |
gatacagcatttctctataacacgtaaagaaggcactgtaaatcatatttactagtatgcggtaaaactaattgatcagcaagttgagttaaactaccat |
26378280 |
T |
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| Q |
101 |
ctctctttgcttgtgaagcacagctctactaatcgacagatggccaatgaatgtgctttgcttgaccggatctctcacagttcccatcctggcagtgaca |
200 |
Q |
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| T |
26378279 |
ctctctttgcttgtgaagcacagctctactgatcgacagatggccaatgaatgtgctttgcttgactggatcactcacagttcccatcctggcagtgaca |
26378180 |
T |
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| Q |
201 |
accctgcaggaaacttacaaacattatatacagaacaatcacgcaatgcttaaattgcatcnnnnnnnttagagctatctaataatcacagatgtttcat |
300 |
Q |
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| T |
26378179 |
accctgcaggaaacttacaaacattatatacagaacaatcacgcaatgcttaaattgcatcaaaaaaattagagctatctaataatcacagatgtttcat |
26378080 |
T |
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| Q |
301 |
ttctttccattgcaatagcagatggtg |
327 |
Q |
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| T |
26378079 |
ttctttccattgcaatagcagatggtg |
26378053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1211 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: scaffold1211
Description:
Target: scaffold1211; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 2273 - 2046
Alignment:
| Q |
1 |
gatacagcatttctctataacac-gtaaagaaggcactgtaaatcatactttctagtatgcgataaaactaattgatcagcaagttgagttaaactacca |
99 |
Q |
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|||||||||||||||||||| | | |||||| | |||||||||| |||| ||||| | ||||| |||||||| |||||||||||||| ||||||| |
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| T |
2273 |
gatacagcatttctctataaaaaagaaaagaacatattgtaaatcatgttttccggtatgtggtaaaattaattgataagcaagttgagttagactacca |
2174 |
T |
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| Q |
100 |
tctctctttgcttgtgaagcacagctctactaatcgacagatggccaatgaatgtgctttgcttgaccggatctctcacagttcccatcctggcagtgac |
199 |
Q |
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| T |
2173 |
tctctctttgcttgtgaagcgcagctctactaatcgacagatggcctgtgagtgtgctttgcttgagtggctctcttacttttcccttctcggcagtgac |
2074 |
T |
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| Q |
200 |
aaccctgcaggaaacttacaaacattat |
227 |
Q |
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||| |||||||||||||||||||||||| |
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| T |
2073 |
aactctgcaggaaacttacaaacattat |
2046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1211; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 326
Target Start/End: Complemental strand, 1726 - 1670
Alignment:
| Q |
269 |
ttagagctatctaataatcacagatgtttcatttctttccattgcaatagcagatggt |
326 |
Q |
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|||||||||||||||| | ||||||| ||||| ||||||||| |||||||||||||| |
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| T |
1726 |
ttagagctatctaatatttccagatgtgtcatt-ctttccatttcaatagcagatggt |
1670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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