View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3327_high_25 (Length: 323)
Name: NF3327_high_25
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3327_high_25 |
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| [»] scaffold1961 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 315
Target Start/End: Complemental strand, 15197404 - 15197106
Alignment:
| Q |
17 |
ttgtatttagaagtagaggatgagtaacaagaaaaagaagaagaataacatcaagaagaataaggatgtttcgatagaggctttcaaggacatgagtgct |
116 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||| ||||||||| | ||||||||||||||||||||||||||| |
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| T |
15197404 |
ttgtatttagaagtagaagatgagtaacaagaagaagaagaagaataacatgaagaagaagaaggatgttcctatagaggctttcaaggacatgagtgct |
15197305 |
T |
|
| Q |
117 |
gaatatgatgacaaggcttggaaaattctggaacatgcatttcgtcggatatacaatcacaacgctaggaatattctcagttttgaagagctttacaggt |
216 |
Q |
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||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15197304 |
gaatatggtgacaaggcttggaacattctggaacatgcaattcgtcggatatacaatcacaacgctaggaatattctcagttttgaagagctttacaggt |
15197205 |
T |
|
| Q |
217 |
tctttctcatcattcttatttgtgttcactgtgcctgtcttttaaaatattatcattggatttagggttttttaaattatcaagttggtaatgatgatg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15197204 |
tctttctcatcattcttatttgtgttcactgtgcctgtcttttaaaatattatcattggatttagggttttttaaattatcaagttggtaatgatgatg |
15197106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 315
Target Start/End: Complemental strand, 15217822 - 15217524
Alignment:
| Q |
17 |
ttgtatttagaagtagaggatgagtaacaagaaaaagaagaagaataacatcaagaagaataaggatgtttcgatagaggctttcaaggacatgagtgct |
116 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||| ||||||||| | ||||||||||||||||||||||||||| |
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| T |
15217822 |
ttgtatttagaagtagaagatgagtaacaagaagaagaagaagaataacatgaagaagaagaaggatgttcctatagaggctttcaaggacatgagtgct |
15217723 |
T |
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| Q |
117 |
gaatatgatgacaaggcttggaaaattctggaacatgcatttcgtcggatatacaatcacaacgctaggaatattctcagttttgaagagctttacaggt |
216 |
Q |
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||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15217722 |
gaatatggtgacaaggcttggaacattctggaacatgcaattcgtcggatatacaatcacaacgctaggaatattctcagttttgaagagctttacaggt |
15217623 |
T |
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| Q |
217 |
tctttctcatcattcttatttgtgttcactgtgcctgtcttttaaaatattatcattggatttagggttttttaaattatcaagttggtaatgatgatg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15217622 |
tctttctcatcattcttatttgtgttcactgtgcctgtcttttaaaatattatcattggatttagggttttttaaattatcaagttggtaatgatgatg |
15217524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1961 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold1961
Description:
Target: scaffold1961; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 141 - 243
Target Start/End: Complemental strand, 1204 - 1102
Alignment:
| Q |
141 |
attctggaacatgcatttcgtcggatatacaatcacaacgctaggaatattctcagttttgaagagctttacaggttctttctcatcattcttatttgtg |
240 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
1204 |
attctggaacatgcaattcgtcggatatacaatcacaacgctaggaatattctcagtttttaagagctttacaggttctttctcatcattctcatttgtg |
1105 |
T |
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| Q |
241 |
ttc |
243 |
Q |
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||| |
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| T |
1104 |
ttc |
1102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 115 - 231
Target Start/End: Complemental strand, 14752205 - 14752092
Alignment:
| Q |
115 |
ctgaatatgatgacaaggcttggaaaattctggaacatgcatttcgtcggatatacaatcacaacgctaggaatattctcagttttgaagagctttacag |
214 |
Q |
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||||||||| ||||||| ||||||| ||||| ||||||||||||| || |||||||||||||||| |||| | ||||||||||||||||||| |||| |
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| T |
14752205 |
ctgaatatggtgacaagacttggaacattcttgaacatgcatttcatcagatatacaatcacaacactag---tggtctcagttttgaagagcttcacag |
14752109 |
T |
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| Q |
215 |
gttctttctcatcattc |
231 |
Q |
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|| |||||||||||||| |
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| T |
14752108 |
gtactttctcatcattc |
14752092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 113 - 232
Target Start/End: Complemental strand, 14760341 - 14760225
Alignment:
| Q |
113 |
tgctgaatatgatgacaaggcttggaaaattctggaacatgcatttcgtcggatatacaatcacaacgctaggaatattctcagttttgaagagctttac |
212 |
Q |
| |
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|||||| |||| ||||||| ||||||| || ||||| |||||| ||| | ||||||| ||||||| ||||||||| ||||||||||||||||||| |
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| T |
14760341 |
tgctgattatgctgacaagacttggaacatcctggagcatgcaattcatgacttatacaaccacaacgttaggaatat---cagttttgaagagctttac |
14760245 |
T |
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| Q |
213 |
aggttctttctcatcattct |
232 |
Q |
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|||||||||||||| ||||| |
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| T |
14760244 |
aggttctttctcatgattct |
14760225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 113 - 226
Target Start/End: Original strand, 17568184 - 17568294
Alignment:
| Q |
113 |
tgctgaatatgatgacaaggcttggaaaattctggaacatgcatttcgtcggatatacaatcacaacgctaggaatattctcagttttgaagagctttac |
212 |
Q |
| |
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|||||| |||| ||||||| ||||||| || ||||| |||||| ||| | ||||||| ||||||| ||||||||| ||||||||||||||||||| |
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| T |
17568184 |
tgctgattatgctgacaagacttggaacatcctggagcatgcaattcatgacttatacaaccacaacgttaggaatat---cagttttgaagagctttac |
17568280 |
T |
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| Q |
213 |
aggttctttctcat |
226 |
Q |
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|||||||||||||| |
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| T |
17568281 |
aggttctttctcat |
17568294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 224
Target Start/End: Complemental strand, 15884444 - 15884339
Alignment:
| Q |
116 |
tgaatatgatgacaaggcttggaaaattctggaacatgcatttcgtcggatatacaatcacaacgctag-gaatattctcagttttgaagagctttacag |
214 |
Q |
| |
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||||| || ||||| | ||||||| ||||| ||| ||||| ||| || |||||||||||||||| || | || || ||||||||||||||||||||| |
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| T |
15884444 |
tgaatttgctgacatgacttggaacattcttgaagatgcaattcatcagatatacaatcacaactcttgtgatta----cagttttgaagagctttacag |
15884349 |
T |
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| Q |
215 |
gttctttctc |
224 |
Q |
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|||||||||| |
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| T |
15884348 |
gttctttctc |
15884339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 17622478 - 17622439
Alignment:
| Q |
191 |
tctcagttttgaagagctttacaggttctttctcatcatt |
230 |
Q |
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||||| ||||||||||||| |||||||||||||||||||| |
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| T |
17622478 |
tctcaattttgaagagcttcacaggttctttctcatcatt |
17622439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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