View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3327_high_29 (Length: 287)
Name: NF3327_high_29
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3327_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 48014312 - 48014572
Alignment:
| Q |
19 |
gttacgacaaatcctgatatatgtcaatctatgaatgccaactcgcctaaacttttttattaccaaagtggctcaataaaaacatctcacatatttaagt |
118 |
Q |
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| T |
48014312 |
gttaagacaaatcctgatatatgtcaatctatgaatgccaactcgcctaaacttttttattatcaaagtggctcaataaaaacatctcacatatttaagt |
48014411 |
T |
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| Q |
119 |
gttttgaactaattcatggcctcacccaacaagacaacatggtccaatctgcacagtgatgctcgagtcatcatggatgcacaatgtaaccacaatgcat |
218 |
Q |
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| T |
48014412 |
gttttgaactaattcatggcctcacccaacaagacaacatggtccaatatgcacaatgatgctcgagtcatcatggatgcacaatgtaaccacaatgtat |
48014511 |
T |
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| Q |
219 |
cgctctgagccgaattaggaccctctggctatccactcaacttttatattggattcatctc |
279 |
Q |
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| T |
48014512 |
cgctctgagccgaattaggaccctctggctatccactcaacttttatattggattcatctc |
48014572 |
T |
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