View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3327_high_30 (Length: 284)
Name: NF3327_high_30
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3327_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 5525851 - 5526104
Alignment:
| Q |
18 |
agacatataagtgaattaatcaatattgagataattatttcaccaaactgagttggtgctggtatattgcatctgttaaa-tttaagccatgaaataatg |
116 |
Q |
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| T |
5525851 |
agacatataagtgaattaatcaatattgagataattatttcaccaaactgagttggtgctggtatattgcatctgttaaactttaagccatgaaataatg |
5525950 |
T |
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| Q |
117 |
aaatgagttatgagaataatagatgtattcatgtagctgtcagttagcttgcttgcccaacctatgggtgcatcacctacttcgtgtttattttagcttg |
216 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5525951 |
aaatgagttatgagaataatagatgtattaatgtagctgtcagttagcttgcttgcccaacctatgggtgcatcacctacttcgtgtttattttagcctg |
5526050 |
T |
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| Q |
217 |
gccccattctctactttgtagagcaaacattaaaaaccatgtcccctcgtaccc |
270 |
Q |
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| T |
5526051 |
gccccattctctactttgtagagcaaacattaaaaaccatgtcccctcgtaccc |
5526104 |
T |
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