View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3327_high_33 (Length: 279)

Name: NF3327_high_33
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3327_high_33
NF3327_high_33
[»] chr5 (2 HSPs)
chr5 (1-256)||(28753890-28754145)
chr5 (3-220)||(6133323-6133537)
[»] chr8 (2 HSPs)
chr8 (21-256)||(3807820-3808055)
chr8 (22-220)||(26946129-26946324)
[»] chr2 (2 HSPs)
chr2 (1-256)||(9011068-9011319)
chr2 (1-217)||(38415336-38415546)
[»] chr7 (1 HSPs)
chr7 (3-220)||(1756198-1756412)
[»] chr3 (1 HSPs)
chr3 (12-229)||(28721359-28721577)
[»] chr6 (5 HSPs)
chr6 (11-256)||(21075811-21076064)
chr6 (11-194)||(21052589-21052774)
chr6 (135-241)||(1120834-1120940)
chr6 (12-110)||(1120740-1120836)
chr6 (17-96)||(4742358-4742438)
[»] chr4 (1 HSPs)
chr4 (12-193)||(30253432-30253614)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 28753890 - 28754145
Alignment:
Q  1 aaagctataagctttgtttcttataagctacaaattttattgaaagaaaacaccaatcaataatacaaatcttccaaactaaaaacaatacaatgtctca 100  Q
    ||||||||||||||| || |||||||||||||| ||||||||||||| | || | || ||||||||||||||||||||||| ||||||||||||||||||    
T  28753890 aaagctataagcttttttccttataagctacaacttttattgaaagagagcatctatgaataatacaaatcttccaaactagaaacaatacaatgtctca 28753989  T
Q  101 atttgataactattatcacagaaaaataattataaaccatttgataaacatttcagaagaacttactacaacttcaatatacttgaatacaagtatgccc 200  Q
    |||||||||| |||||||||||||||| |||||| |||||||||||||||||| |||||| |||| ||||||||| ||||| ||||||||||||||||||    
T  28753990 atttgataaccattatcacagaaaaatgattatataccatttgataaacattttagaagatcttattacaacttcgatatatttgaatacaagtatgccc 28754089  T
Q  201 ctatccattatagaaaactaaaaccttgagtttttccttcaaccgtacaaaaaatt 256  Q
    | | |||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  28754090 ccacccattatagaaaactaaatccttgagtttttccttcagccgtacaaaaaatt 28754145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 6133323 - 6133537
Alignment:
Q  3 agctataagctttgtttcttataagctacaaattttattgaaagaaaacaccaatcaata-atacaaatcttccaaactaaaaacaatacaatgtctcaa 101  Q
    ||||||||||||| |||||||||||||| |  ||||| ||||||| ||||||||||||   |||||||| |||||||||| || |||||||| |||||||    
T  6133323 agctataagctttttttcttataagctaaagcttttactgaaagagaacaccaatcaaacgatacaaatattccaaactagaa-caatacaaggtctcaa 6133421  T
Q  102 tttgataactattatcacagaaaaataattataaaccatttgataaacatttcagaagaacttactacaacttcaatatacttgaatacaagtatgcccc 201  Q
    | ||||||| ||||||| ||||||| |||||||||||||||||||||||||||   ||| |||| ||||||||||||| | |||||||||||||||||||    
T  6133422 tgtgataaccattatcatagaaaaaaaattataaaccatttgataaacatttc---agatcttattacaacttcaatacatttgaatacaagtatgcccc 6133518  T
Q  202 tatccattatagaaaacta 220  Q
     | ||||||||||||||||    
T  6133519 cacccattatagaaaacta 6133537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 21 - 256
Target Start/End: Original strand, 3807820 - 3808055
Alignment:
Q  21 ttataagctacaaattttattgaaagaaaacaccaatcaataatacaaatcttccaaactaaaaacaatacaatgtctcaatttgataactattatcaca 120  Q
    ||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||| || |||||||||||||||||||||  ||||| |||||||||    
T  3807820 ttataagctacaacttttattgaaagagaacacctatcaataatacaaatcttccaaagtagaaacaatacaatgtctcaattcaataaccattatcaca 3807919  T
Q  121 gaaaaataattataaaccatttgataaacatttcagaagaacttactacaacttcaatatacttgaatacaagtatgcccctatccattatagaaaacta 220  Q
    |||||| |||||||||||| |||||||||||||||||||| |||| ||||||||||||||| | ||||||||||||||||| | ||||||||||||||||    
T  3807920 gaaaaacaattataaaccagttgataaacatttcagaagatcttattacaacttcaatatattggaatacaagtatgcccccacccattatagaaaacta 3808019  T
Q  221 aaaccttgagtttttccttcaaccgtacaaaaaatt 256  Q
    ||||||||||||||||||||| ||||||||||||||    
T  3808020 aaaccttgagtttttccttcagccgtacaaaaaatt 3808055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 22 - 220
Target Start/End: Original strand, 26946129 - 26946324
Alignment:
Q  22 tataagctacaaattttattgaaagaaaacaccaatcaataatacaaatcttccaaactaaaaacaatacaatgtctcaatttgataactattatcacag 121  Q
    |||||||||||| ||||||||||||| |||||||||||| ||||||||| |||||||||| |||||||||||| ||||||||||||||| ||| ||| ||    
T  26946129 tataagctacaacttttattgaaagagaacaccaatcaacaatacaaatattccaaactagaaacaatacaatatctcaatttgataaccattttcatag 26946228  T
Q  122 aaaaataattataaaccatttgataaacatttcagaagaacttactacaacttcaatatacttgaatacaagtatgcccctatccattatagaaaacta 220  Q
     |||| |||||||||||||||| ||||||||||   ||| |||| ||||||||||||||| ||||||||||||||||||  | ||||||||||||||||    
T  26946229 gaaaaaaattataaaccatttgttaaacatttc---agatcttattacaacttcaatatatttgaatacaagtatgccctcacccattatagaaaacta 26946324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 9011319 - 9011068
Alignment:
Q  1 aaagctataagctttgtttcttataagctacaaattttattgaaagaaaacaccaatcaataatacaaatcttccaaactaaaaacaatacaatgtctca 100  Q
    ||||||||||||||| ||||||||||||||||| |||| |||||||| |||  | ||||||||||||||| |||||||||| |||||||||||||||       
T  9011319 aaagctataagctttttttcttataagctacaactttttttgaaagagaacttctatcaataatacaaattttccaaactagaaacaatacaatgtc--- 9011223  T
Q  101 atttgataactattatcacagaaaaataattataaaccatttgataaacatttcagaagaacttactacaacttcaatatacttgaatac-aagtatgcc 199  Q
      |||||| | ||| ||||||||| ||||||||||||||| ||||||||||||||||||| |||| ||||| ||||||||| |||||||| |||||||||    
T  9011222 --ttgatacccattgtcacagaaacataattataaaccatctgataaacatttcagaagatcttattacaatttcaatatatttgaatacaaagtatgcc 9011125  T
Q  200 cctatccattatagaaaactaaaaccttgagtttttccttcaaccgtacaaaaaatt 256  Q
     | | |||||||| ||||||||||||||||||||||| |||| ||||||||||||||    
T  9011124 accacccattataaaaaactaaaaccttgagtttttcattcagccgtacaaaaaatt 9011068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 38415546 - 38415336
Alignment:
Q  1 aaagctataagctttgtttcttataagctacaaattttattgaaagaaaacaccaatcaataatacaaatcttccaaactaaaaacaatacaatgtctca 100  Q
    |||||||||| |||| |||||||||||||| || ||||||||||||| |||||| |||||||||||||||||||||||| | |||||||| |||          
T  38415546 aaagctataatctttttttcttataagctataacttttattgaaagagaacacctatcaataatacaaatcttccaaacaagaaacaataaaat------ 38415453  T
Q  101 atttgataactattatcacagaaaaa--taattataaaccatttgataaacatttcagaagaacttactacaacttcaatatacttgaatacaagtatgc 198  Q
      |||||||| ||| ||||| |||||  ||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  38415452 --ttgataaccattgtcacaaaaaaaaataattataaactatttgataaacatttcagaagatcttattacaacttcaatatacttgaatacaagtatgc 38415355  T
Q  199 ccctatccattatagaaaa 217  Q
    ||| | |||||||| ||||    
T  38415354 ccccacccattataaaaaa 38415336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 1756412 - 1756198
Alignment:
Q  3 agctataagctttg-tttcttataagctacaaattttattgaaagaaaacaccaatcaataatacaaatcttccaaactaaaaacaatacaatgtctcaa 101  Q
    |||||||||||||  ||||||||||||||||| ||||||||||||  ||||||||||||  |||||||| |||||||||| |||||||||||||||||||    
T  1756412 agctataagcttttctttcttataagctacaacttttattgaaagtgaacaccaatcaaccatacaaatattccaaactagaaacaatacaatgtctcaa 1756313  T
Q  102 tttgataactattatcacagaaaaataattataaaccatttgataaacatttcagaagaacttactacaacttcaatatacttgaatacaagtatgcccc 201  Q
    ||||||||| ||||||| ||||||| |||||||||||||||||||||||||||   ||| |||| ||||||||||||||| |||||||||||||||| ||    
T  1756312 tttgataaccattatcatagaaaaaaaattataaaccatttgataaacatttc---agatcttattacaacttcaatataattgaatacaagtatgcgcc 1756216  T
Q  202 tatccattatagaaaacta 220  Q
     | ||||||||||||||||    
T  1756215 ca-ccattatagaaaacta 1756198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 12 - 229
Target Start/End: Complemental strand, 28721577 - 28721359
Alignment:
Q  12 ctttgtttcttataagctacaaattttattgaaagaaaacaccaatcaataatacaaatcttccaaactaaaaacaatacaatgtctcaatttgataact 111  Q
    |||| ||||||||||||| |||  |||||||||||  |||  | |||||||||||||||||| |||| || ||||||| ||||||||||||||||| ||     
T  28721577 ctttttttcttataagctgcaacctttattgaaagcgaac--ctatcaataatacaaatctttcaaattagaaacaattcaatgtctcaatttgattacc 28721480  T
Q  112 attatcacagaaaaata---attataaaccatttgataaacatttcagaagaacttactacaacttcaatatacttgaatacaagtatgcccctatccat 208  Q
     |||||||| |||||||   |||||||||||||||||||||||||  ||||| |||| ||||||||||||||| ||||||||||||||||||| | ||||    
T  28721479 cttatcacataaaaatatttattataaaccatttgataaacattttggaagatcttattacaacttcaatatatttgaatacaagtatgcccccacccat 28721380  T
Q  209 tatagaaaactaaaaccttga 229  Q
    |||||||||||||||||||||    
T  28721379 tatagaaaactaaaaccttga 28721359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 11 - 256
Target Start/End: Original strand, 21075811 - 21076064
Alignment:
Q  11 gctttgtttcttataagctacaaattttattgaaagaaaacaccaatcaataatacaa-atcttccaaactaaaaacaatacaatgtctcaatttgataa 109  Q
    ||||| |||||||||||||| || ||| ||||||||| |||||| | |||||| |||| |||||||||||||  |||| |||||||||| ||||||||||    
T  21075811 gctttttttcttataagctaaaactttcattgaaagagaacacctagcaataacacaagatcttccaaactaggaacattacaatgtctaaatttgataa 21075910  T
Q  110 ctattatcacagaaaaataattataaaccatttgataa-acatttcagaagaacttactacaacttcaatatacttgaatacaagtatgcc----cctat 204  Q
    | |||||||  ||||||||||| |||||||||||||||  ||||||| |||| |||| ||||||||||||||| |||||||||||| | ||    || ||    
T  21075911 ccattatcatggaaaaataattctaaaccatttgataacccatttcacaagatcttattacaacttcaatatatttgaatacaagttttccgccacccat 21076010  T
Q  205 ccattatagaaaactaaaacctt--gagtttttccttcaaccgtacaaaaaatt 256  Q
    ||||  || | ||||||||||||  ||||||||||||||||||| |||| ||||    
T  21076011 ccatcgtatataactaaaaccttgagagtttttccttcaaccgtccaaagaatt 21076064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 11 - 194
Target Start/End: Original strand, 21052589 - 21052774
Alignment:
Q  11 gctttgtttcttataagctacaaattttattgaaagaaaacaccaatcaataatacaa-atcttccaaactaaaaacaatacaatgtctcaatttgataa 109  Q
    ||||| |||||||||||||| || ||| ||||||||| |||||| | |||||| |||| |||||||||||||  |||| |||||||||| ||||||||||    
T  21052589 gctttttttcttataagctaaaactttcattgaaagagaacacctagcaataacacaagatcttccaaactaggaacattacaatgtctaaatttgataa 21052688  T
Q  110 ctattatcacagaaaaataattataaaccatttgataa-acatttcagaagaacttactacaacttcaatatacttgaatacaagt 194  Q
    | |||||||  ||||||||||| |||||||||||||||  ||||||| |||| |||| ||||||||||||||| ||||||||||||    
T  21052689 ccattatcatggaaaaataattctaaaccatttgataacccatttcacaagatcttattacaacttcaatatatttgaatacaagt 21052774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 135 - 241
Target Start/End: Original strand, 1120834 - 1120940
Alignment:
Q  135 aaccatttgataaacatttcagaagaacttactacaacttcaatatacttgaatacaagtatgcccctatccattatagaaaactaaaaccttgagtttt 234  Q
    |||||||||||||||||||| ||||| |||| ||||| |||||||||   ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1120834 aaccatttgataaacatttccgaagatcttattacaatttcaatatataagaatacaagtatgcccccatccattatagaaaactaaaaccttgagtttt 1120933  T
Q  235 tccttca 241  Q
    |||||||    
T  1120934 tccttca 1120940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 1120740 - 1120836
Alignment:
Q  12 ctttgtttcttataagctacaaattttattgaaagaaaacaccaatcaataatacaaatcttccaaactaaaaacaatacaatgtctcaatttgataac 110  Q
    |||| ||||||||||||| ||| ||||||||||||  ||   | ||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||    
T  1120740 ctttttttcttataagctgcaacttttattgaaagcgaat--ctatcaataattcaaatcttccagactagaaacaatacaatgtctcaatttgataac 1120836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 4742358 - 4742438
Alignment:
Q  17 tttcttataagctacaaattttattgaaagaaaacaccaatcaataatacaa-atcttccaaactaaaaacaatacaatgt 96  Q
    |||||||||||||| || | ||||||||||| |||||| | |||||| |||| |||||||||||||  |||||||||||||    
T  4742358 tttcttataagctaaaactattattgaaagagaacacctagcaataacacaagatcttccaaactaggaacaatacaatgt 4742438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 193
Target Start/End: Original strand, 30253432 - 30253614
Alignment:
Q  12 ctttgtttcttataagctacaaattttattgaaagaaaacaccaatcaataatacaaatcttccaaactaaaaacaatacaatgtctcaatttgataact 111  Q
    |||| ||||||||||||| |||  |||||||||||  |||  | |||||||||||||||||| || |||| ||||||||||||||||||||||||| ||     
T  30253432 ctttttttcttataagctgcaacgtttattgaaagcgaac--ctatcaataatacaaatctttcagactagaaacaatacaatgtctcaatttgattacc 30253529  T
Q  112 attatcacagaaaaata---attataaaccatttgataaacatttcagaagaacttactacaacttcaatatacttgaatacaag 193  Q
    ||||||||| |||||||   |||||||||||||||||||||||||| |||||  ||| | |||||| |||||| || ||||||||    
T  30253530 attatcacataaaaatatttattataaaccatttgataaacatttcggaagatgttattgcaactttaatatatttcaatacaag 30253614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University