View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3327_high_35 (Length: 273)

Name: NF3327_high_35
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3327_high_35
NF3327_high_35
[»] chr5 (2 HSPs)
chr5 (7-254)||(29687463-29687710)
chr5 (184-254)||(29712888-29712958)
[»] chr4 (12 HSPs)
chr4 (175-254)||(48156846-48156925)
chr4 (186-254)||(45366640-45366708)
chr4 (186-254)||(45372476-45372544)
chr4 (197-254)||(48735734-48735791)
chr4 (186-251)||(48862832-48862897)
chr4 (217-254)||(7800259-7800296)
chr4 (217-254)||(7813102-7813139)
chr4 (217-254)||(7822591-7822628)
chr4 (186-251)||(47207525-47207590)
chr4 (185-254)||(48171008-48171077)
chr4 (186-254)||(48148104-48148172)
chr4 (186-254)||(48898313-48898381)
[»] chr3 (2 HSPs)
chr3 (154-254)||(11006381-11006482)
chr3 (186-254)||(11024956-11025024)
[»] chr8 (4 HSPs)
chr8 (186-254)||(12199898-12199966)
chr8 (186-254)||(12444326-12444394)
chr8 (221-254)||(4032335-4032368)
chr8 (213-254)||(15348480-15348521)


Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 29687463 - 29687710
Alignment:
Q  7 tcgaagaaaatattccccaacattactgatgnnnnnnnnnnnnntcatagtcctctaaaattaagacaacatataaaacagagatgggaacccgttaaaa 106  Q
    ||||| |||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29687463 tcgaataaaatattccccaacattactgatgaaaaagaaaaaaatcatagtcctctaaaattaagacaacatataaaacatagatgggaacccgttaaaa 29687562  T
Q  107 cgacaagtaacaaactggtgcaggaaactaaaggaggaagaggcatggatggagacgaagaagacctctatctgcccattgaattgatcattcaaatcct 206  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29687563 cgactagtaacaaactggcgcaggaaactaaaggaggaagaggcatggatggagacgaagaagacctctatctgcccattgaattgatcattcaaatcct 29687662  T
Q  207 tctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaa 254  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  29687663 tctaaagttaccagtgaagtctcttatacgcttcaagtgtgtttgtaa 29687710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 29712958 - 29712888
Alignment:
Q  184 attgaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaa 254  Q
    ||||| || ||||||||||||||| ||| ||||||||||||||||||||| || |||||||| ||||||||    
T  29712958 attgagttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaa 29712888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 48156925 - 48156846
Alignment:
Q  175 tatctgcccattgaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaa 254  Q
    ||||||||  |||||||||| |||||||||||| ||  ||||||||||||||||||| |||| |||||||| ||||||||    
T  48156925 tatctgccacttgaattgataattcaaatccttttatggttaccggtgaagtctcttctacgtttcaagtgcgtttgtaa 48156846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 254
Target Start/End: Complemental strand, 45366708 - 45366640
Alignment:
Q  186 tgaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaa 254  Q
    ||||||||| || |||||||| |||| |||||| ||||||||||||||||| |||||||| ||||||||    
T  45366708 tgaattgatgatccaaatcctactaaggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaa 45366640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 254
Target Start/End: Complemental strand, 45372544 - 45372476
Alignment:
Q  186 tgaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaa 254  Q
    ||||||||| |||||||| || |||| ||| |||||||||||||||||||| ||||| |||||||||||    
T  45372544 tgaattgatgattcaaattctactaaggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaa 45372476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 48735791 - 48735734
Alignment:
Q  197 ttcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaa 254  Q
    ||||||| ||||| | ||||||||||||||||||||| || ||||| |||||||||||    
T  48735791 ttcaaattcttctgaggttaccggtgaagtctcttattcgtttcaaatgtgtttgtaa 48735734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 48862832 - 48862897
Alignment:
Q  186 tgaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttg 251  Q
    |||||||||||| | |||||| |||| ||||||||||||||||||||| || ||||| || |||||    
T  48862832 tgaattgatcatcctaatcctgctaaggttaccggtgaagtctcttattcgtttcaaatgcgtttg 48862897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 254
Target Start/End: Original strand, 7800259 - 7800296
Alignment:
Q  217 ccggtgaagtctcttatacgcttcaagtgtgtttgtaa 254  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  7800259 ccggtgaagtatcttatacgtttcaagtgtgtttgtaa 7800296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 254
Target Start/End: Original strand, 7813102 - 7813139
Alignment:
Q  217 ccggtgaagtctcttatacgcttcaagtgtgtttgtaa 254  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  7813102 ccggtgaagtatcttatacgtttcaagtgtgtttgtaa 7813139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 254
Target Start/End: Original strand, 7822591 - 7822628
Alignment:
Q  217 ccggtgaagtctcttatacgcttcaagtgtgtttgtaa 254  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  7822591 ccggtgaagtatcttatacgtttcaagtgtgtttgtaa 7822628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 47207525 - 47207590
Alignment:
Q  186 tgaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttg 251  Q
    ||||||||||||   ||||||  || ||||||||||||||||||||||||| || ||| |||||||    
T  47207525 tgaattgatcatcttaatcctattatagttaccggtgaagtctcttatacgttttaagagtgtttg 47207590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 48171077 - 48171008
Alignment:
Q  185 ttgaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaa 254  Q
    ||||||||||  ||||||| || || | |||| |||||||||||||| |||| ||||| |||||||||||    
T  48171077 ttgaattgatagttcaaattctgctgaggttatcggtgaagtctcttctacgtttcaaatgtgtttgtaa 48171008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 254
Target Start/End: Complemental strand, 48148172 - 48148104
Alignment:
Q  186 tgaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaa 254  Q
    |||||||||  |||||||||||  || |||||| |||||||||||||| || ||||| ||||| |||||    
T  48148172 tgaattgatagttcaaatcctttcaaggttaccagtgaagtctcttattcgtttcaaatgtgtctgtaa 48148104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 48898313 - 48898381
Alignment:
Q  186 tgaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaa 254  Q
    ||||||| |||||||||| || || |   |||| ||||||||||||| ||| |||||||||||||||||    
T  48898313 tgaattggtcattcaaattctgctgagtctacctgtgaagtctcttacacgtttcaagtgtgtttgtaa 48898381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 254
Target Start/End: Complemental strand, 11006482 - 11006381
Alignment:
Q  154 gatggagacgaagaa-gacctctatctgcccattgaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgt 252  Q
    ||||||||||||||  | ||| ||||||||   |||||||||||| |||||| |  | | ||| ||||||||||| |||||||| |||||||||||||||    
T  11006482 gatggagacgaagaccggcctgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgt 11006383  T
Q  253 aa 254  Q
    ||    
T  11006382 aa 11006381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 254
Target Start/End: Complemental strand, 11025024 - 11024956
Alignment:
Q  186 tgaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaa 254  Q
    |||||||||||| |||||| |  | | |||||||||||||||||| ||||| ||||| || ||||||||    
T  11025024 tgaattgatcatacaaatcatgttgaggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaa 11024956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 12199898 - 12199966
Alignment:
Q  186 tgaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaa 254  Q
    |||||| |||||||||||||| || | ||| ||||||||||||||| || | ||||| |||||||||||    
T  12199898 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaa 12199966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 12444326 - 12444394
Alignment:
Q  186 tgaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaa 254  Q
    |||||| |||||||||||||| || | ||| ||||||||||||||| || | ||||| |||||||||||    
T  12444326 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaa 12444394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 254
Target Start/End: Complemental strand, 4032368 - 4032335
Alignment:
Q  221 tgaagtctcttatacgcttcaagtgtgtttgtaa 254  Q
    |||||||||||||||| |||||||||||||||||    
T  4032368 tgaagtctcttatacgtttcaagtgtgtttgtaa 4032335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 15348480 - 15348521
Alignment:
Q  213 gttaccggtgaagtctcttatacgcttcaagtgtgtttgtaa 254  Q
    |||||||||||||||||||||||| ||||| || ||||||||    
T  15348480 gttaccggtgaagtctcttatacgtttcaaatgcgtttgtaa 15348521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University