View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3327_high_37 (Length: 259)
Name: NF3327_high_37
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3327_high_37 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 15687401 - 15687659
Alignment:
| Q |
11 |
cagagaacataaaacagatttaacatcatcatataaatagctctgaaacaagggtactcctaatttcatgttgtaatatattctaatggtgtacttgaca |
110 |
Q |
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| T |
15687401 |
cagagaacataaaacagatttaacatcatcatataaatagctctgaaacaaaggtactcctaatttcatgttgtaatatattctaatggtgtacttgaca |
15687500 |
T |
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| Q |
111 |
accat--------------agtcgatattcaaattgtgaatctggaagatctattttatgaaacgtgaattgaatctattaatgtatacatgaccaatga |
196 |
Q |
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| T |
15687501 |
accatggttgtcattatcaagtcgatattcaaattgtgaatctggaagatctattttccgaaacgtgaattgaatctattaatgtatacatgaccaatga |
15687600 |
T |
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| Q |
197 |
aatatgacattttaaagtaaaaacaaggggtttgcataaaagcataagcacttatatca |
255 |
Q |
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| T |
15687601 |
aatatgacattttaaagtaaaaacaaggggtttgcataaaagaataagcacttatatca |
15687659 |
T |
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