View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3327_high_39 (Length: 254)
Name: NF3327_high_39
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3327_high_39 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 41310554 - 41310785
Alignment:
| Q |
1 |
ttcagttactgtgaaaaaatgacaatgtatgattcatcattcagtggttaaggactaaaggaatagtgctgaatgnnnnnnnnnnnnaacagcatattcc |
100 |
Q |
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| T |
41310554 |
ttcagttactgtgagaaaatgacaatgtatgattcatcattcagtggttaaggactaaaggaatagtgctgaatgttttttttctttaacagcatattcc |
41310653 |
T |
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| Q |
101 |
attgttaatgttaattaatcaattaccaaatatttgtcaaaaactactaaagaaccacaaaatgagagttcataatacaagatagatatcaataaaatga |
200 |
Q |
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| T |
41310654 |
attgttaatgttaa----tcaattaccaaatatttgtcaaaaactactaaagaaccacaaaatgagagttcataatacaagatagatatcagtaaaatga |
41310749 |
T |
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| Q |
201 |
taaataccaaaatttcacaatcaaattcttctagtt |
236 |
Q |
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| T |
41310750 |
taaataccaatatttcacaatcaaattcttctagtt |
41310785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 43164372 - 43164443
Alignment:
| Q |
165 |
agagttcataatacaagatagatatcaataaaatgataaataccaaaatttcacaatcaaattcttctagtt |
236 |
Q |
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| T |
43164372 |
agagttcatgatacaagatagatatcactaaaaaggtaaatatgaatatttcacaatcaaattcttctagtt |
43164443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 9562018 - 9561963
Alignment:
| Q |
20 |
tgacaatgtatgattcatcattcagtggttaaggactaaaggaatagtgctgaatg |
75 |
Q |
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| T |
9562018 |
tgacaatgtttgattcatcattcagtggttaaggaccaaaggaataatgttgaatg |
9561963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 9561951 - 9561886
Alignment:
| Q |
88 |
aacagcatattccattgttaatgttaattaatcaattaccaaatatttgtcaaaaactactaaagaacca |
157 |
Q |
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| T |
9561951 |
aacagcatattccgttgttaatgt----taatcaattaccaattttttttcaaaaaatgctaaagaacca |
9561886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 30166226 - 30166165
Alignment:
| Q |
165 |
agagttcataatacaagatagatatcaataaaatgataaataccaaaatttcacaatcaaat |
226 |
Q |
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| T |
30166226 |
agagttcataatacaagatcaatatcagtaaaatggaaaatacaaatatttcacaatcaaat |
30166165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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