View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3327_high_43 (Length: 250)

Name: NF3327_high_43
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3327_high_43
NF3327_high_43
[»] chr8 (2 HSPs)
chr8 (9-250)||(1097515-1097756)
chr8 (9-250)||(1064294-1064535)


Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 1097756 - 1097515
Alignment:
Q  9 gatatgaattgctgatgatttgaacttattttcttttatgcagccacagaagcttatacatgtgttgcagaatcaatatttccggtactaacttatttga 108  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1097756 gatatgaattgctgatgatttgaacttatttttttttatgcagccacagaagcttatacatgtgttgcagaatcaatatttccggtactaacttatttga 1097657  T
Q  109 aatgattatgtctgattatatttttctaaacttcatggtaaatttgatgatattaattttcgaatttatgaggctgttctctgtttttaattcacaaact 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1097656 aatgattatgtctgattatatttttctaaacttcatggtaaatttgatgatattaattttcgaatttatgaggctgttctctgtttttaattcacaaact 1097557  T
Q  209 gcagataaaggtcgaagacttcttttggcaccttttctcgga 250  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  1097556 gcagataaaggtcgaagacttcttttggcaccttttctcgga 1097515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 1064294 - 1064535
Alignment:
Q  9 gatatgaattgctgatgatttgaacttattttcttttatgcagccacagaagcttatacatgtgttgcagaatcaatatttccggtactaacttatttga 108  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| || |||||||||||||||||||||||||||| ||||||||    
T  1064294 gatatgaattgctgatgatttgaacttattttctgttatgcagccccagaagcttatacgtgcgttgcagaatcaatatttccggtactaatttatttga 1064393  T
Q  109 aatgattatgtctgattatatttttctaaacttcatggtaaatttgatgatattaattttcgaatttatgaggctgttctctgtttttaattcacaaact 208  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1064394 aatgattacgtctgattatatttttctaaacttcgtggtaaatttgataatattaattttcgaatttatgaggttgttctctgtttttaattcacaaact 1064493  T
Q  209 gcagataaaggtcgaagacttcttttggcaccttttctcgga 250  Q
    |||||||||||| ||||||||||||||| || ||||||||||    
T  1064494 gcagataaaggttgaagacttcttttggtactttttctcgga 1064535  T

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