View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3327_high_47 (Length: 249)
Name: NF3327_high_47
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3327_high_47 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 2370008 - 2369784
Alignment:
| Q |
19 |
tattatataatataaaagttggcacgcgccattattaatcattcatcaagaagcacttatttgatcataagaccaaatgcacgacgcttagacacaca-- |
116 |
Q |
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| T |
2370008 |
tattatataatataaaagttggcacgggccattatcaatcattcatcaagaagcacttacttgatcataagaccaaatgtacgacgcttagacacacaca |
2369909 |
T |
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| Q |
117 |
atgacacacttgtccctaaaatattaatttagttttattttttattattagaaaaaatatctctttgtatgtatacctaaacacaatacaagttgtgacg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2369908 |
atgacacacttgtccctaaaatattaatttagttttattttttattattagaaaaaatatctctttgtatgtatacctaaacacaatacaagttgtgacg |
2369809 |
T |
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| Q |
217 |
atggaagactagctttcattcatct |
241 |
Q |
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| T |
2369808 |
atggaagactagctttcattcatct |
2369784 |
T |
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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 26788413 - 26788485
Alignment:
| Q |
116 |
aatgacacacttgtccctaaaatattaatttagttttattttttattattagaaaaaatatctctttgtatgt |
188 |
Q |
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| T |
26788413 |
aatgagacacttgtccccaaaatattaaattaattttattttttatttttagaaaaaatgtctctttatatgt |
26788485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 2228568 - 2228502
Alignment:
| Q |
110 |
acacacaatgacacacttgtccctaaaatattaatttagttttattttttattattagaaaaaatat |
176 |
Q |
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| T |
2228568 |
acacataatgagacacttatcctcaaaatgttaaattagttttattttttattaatagaaaaaatat |
2228502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 111 - 206
Target Start/End: Original strand, 30204149 - 30204244
Alignment:
| Q |
111 |
cacacaatgacacacttgtccctaaaatattaatttagttttattttttattattagaaaaaatatctctttgtatgtatacctaaacacaataca |
206 |
Q |
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| T |
30204149 |
cacacaatgaagcacttgttctcaaaatgtttattttattttattttttattattagaaaaaatgtctctttgcatgtgtgcctaaacactataca |
30204244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 206
Target Start/End: Complemental strand, 26317901 - 26317805
Alignment:
| Q |
110 |
acacacaatgacacacttgtccctaaaatattaatttagttttattttttattattagaaaaaatatctctttgtatgtatacctaaacacaataca |
206 |
Q |
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| T |
26317901 |
acacacaatgatgtatttgtccccaaaatgtttattttactttatcttttattattagaaaaaatatatctttgtatgtgtgcctaaacactataca |
26317805 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 206
Target Start/End: Complemental strand, 43572298 - 43572215
Alignment:
| Q |
123 |
cacttgtccctaaaatattaatttagttttattttttattattagaaaaaatatctctttgtatgtatacctaaacacaataca |
206 |
Q |
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| T |
43572298 |
cacttgtccccaaaatgtttatttaattttattttttattattagaaaatatgtctgcttgtatgtgtgcctaaacactataca |
43572215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 19316111 - 19316160
Alignment:
| Q |
150 |
tttattttttattattagaaaaaatatctctttgtatgtatacctaaaca |
199 |
Q |
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| T |
19316111 |
tttattttctattattagaaaaaatgtctcttcgtatgtgtgcctaaaca |
19316160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 26351840 - 26351880
Alignment:
| Q |
134 |
aaaatattaatttagttttattttttattattagaaaaaat |
174 |
Q |
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||||| |||| ||| |||||||||||||||||||||||||| |
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| T |
26351840 |
aaaatgttaaattaattttattttttattattagaaaaaat |
26351880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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