View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3327_high_53 (Length: 241)
Name: NF3327_high_53
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3327_high_53 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 1097535 - 1097307
Alignment:
| Q |
1 |
cttttggcaccttttctcggatgatgctataaattttcttgagtcttatcgtaaaagatgcagcgataaaggttgctgcatgaaactcttaaacctatac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1097535 |
cttttggcaccttttctcggatgatgctataaattttcttgagtcttatcgtaaaagatgcagcgataaaggttgctgcatgaaactcttaaacctatac |
1097436 |
T |
|
| Q |
101 |
attttaatttccagttttttctagtcttgtttgctttcctcgctgtcatctaatatatttcctaggaat----gaatagtaataactgaagtcttttccc |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1097435 |
attttaatttccagttttttctagtcttgtttgctttcctcgctgtcatctaatatatttcctaggaatgaatgaatagtaataactgaagtcttttccc |
1097336 |
T |
|
| Q |
197 |
atgattttatcttccttttaacatgtttc |
225 |
Q |
| |
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|||||||||||||||||| |||||||||| |
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| T |
1097335 |
atgattttatcttcctttcaacatgtttc |
1097307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 1064515 - 1064703
Alignment:
| Q |
1 |
cttttggcaccttttctcggatgatgctataaattttcttgagtcttatcgtaaaagatgcagcgataaaggttg-ctgcatgaaactcttaaacctata |
99 |
Q |
| |
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||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||| |
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| T |
1064515 |
cttttggtactttttctcggatgatgctataaattttcttgagtcttatcgtaaaagatgcggcgataaaggtagcctgcatgaaactcttaaacctata |
1064614 |
T |
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| Q |
100 |
cattttaatttccagtt---ttttctagtcttgtttgctttcctcgctgtcatctaatatatttcctaggaatgaatagtaataactgaagtcttttccc |
196 |
Q |
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||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||| ||||||| |
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| T |
1064615 |
gattttaatttccattttcattttctagtcttgtttgctttc-----------ctaatatatttcctaggaatgattagtgataactgaagttttttccc |
1064703 |
T |
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