View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3327_high_55 (Length: 238)

Name: NF3327_high_55
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3327_high_55
NF3327_high_55
[»] chr6 (11 HSPs)
chr6 (9-225)||(13417436-13417653)
chr6 (9-103)||(5483894-5483988)
chr6 (18-104)||(1158277-1158363)
chr6 (18-103)||(17265754-17265839)
chr6 (22-102)||(7649833-7649913)
chr6 (30-101)||(8380991-8381062)
chr6 (23-101)||(7649834-7649912)
chr6 (1-95)||(30627836-30627930)
chr6 (30-103)||(12450393-12450466)
chr6 (23-103)||(8646712-8646791)
chr6 (16-104)||(30438771-30438859)
[»] chr3 (21 HSPs)
chr3 (9-103)||(19649612-19649706)
chr3 (23-103)||(32711235-32711315)
chr3 (23-103)||(52864986-52865066)
chr3 (21-103)||(45010783-45010865)
chr3 (23-101)||(48593177-48593255)
chr3 (2-104)||(51723392-51723494)
chr3 (21-102)||(2312951-2313032)
chr3 (38-86)||(47218817-47218865)
chr3 (58-101)||(653272-653315)
chr3 (2-101)||(33371875-33371973)
chr3 (1-103)||(40198408-40198510)
chr3 (23-97)||(46354797-46354871)
chr3 (21-103)||(49885412-49885493)
chr3 (31-103)||(2544501-2544574)
chr3 (23-96)||(30672544-30672617)
chr3 (16-101)||(36571406-36571490)
chr3 (68-101)||(45010830-45010863)
chr3 (23-103)||(25645219-25645297)
chr3 (16-104)||(27302111-27302199)
chr3 (1-101)||(28043401-28043501)
chr3 (63-103)||(32711277-32711317)
[»] chr8 (18 HSPs)
chr8 (18-103)||(3236360-3236445)
chr8 (23-103)||(5031499-5031579)
chr8 (16-102)||(9812450-9812536)
chr8 (16-103)||(8793747-8793834)
chr8 (31-90)||(8818696-8818755)
chr8 (33-100)||(29243349-29243416)
chr8 (65-103)||(13831437-13831475)
chr8 (23-101)||(24915205-24915282)
chr8 (18-104)||(34711111-34711197)
chr8 (58-103)||(7693066-7693111)
chr8 (2-103)||(12958790-12958890)
chr8 (49-94)||(14916422-14916467)
chr8 (38-99)||(33057903-33057964)
chr8 (73-101)||(13639415-13639443)
chr8 (73-101)||(13739828-13739856)
chr8 (68-104)||(27988155-27988191)
chr8 (68-104)||(28045457-28045493)
chr8 (16-104)||(44579925-44580013)
[»] chr5 (17 HSPs)
chr5 (23-103)||(26327571-26327650)
chr5 (21-103)||(38826060-38826142)
chr5 (24-101)||(1420692-1420769)
chr5 (38-90)||(5004006-5004058)
chr5 (24-103)||(919675-919754)
chr5 (21-99)||(1950622-1950700)
chr5 (58-104)||(12094270-12094316)
chr5 (35-101)||(32459228-32459294)
chr5 (2-103)||(1015189-1015289)
chr5 (63-104)||(22398073-22398114)
chr5 (63-104)||(28499853-28499894)
chr5 (64-101)||(33102934-33102971)
chr5 (23-103)||(892580-892660)
chr5 (23-103)||(12295707-12295787)
chr5 (23-103)||(21032563-21032643)
chr5 (21-77)||(37322603-37322659)
chr5 (65-101)||(40740374-40740410)
[»] chr2 (26 HSPs)
chr2 (21-101)||(7833315-7833395)
chr2 (9-103)||(9152412-9152506)
chr2 (23-102)||(35728499-35728578)
chr2 (61-103)||(12486065-12486107)
chr2 (61-103)||(41332698-41332740)
chr2 (2-103)||(4063286-4063386)
chr2 (18-103)||(32457246-32457331)
chr2 (2-103)||(41153144-41153245)
chr2 (38-95)||(43893939-43893996)
chr2 (21-101)||(14803068-14803148)
chr2 (5-101)||(30435257-30435353)
chr2 (1-101)||(41205503-41205603)
chr2 (16-103)||(38983032-38983119)
chr2 (62-104)||(2429097-2429139)
chr2 (73-103)||(8687316-8687346)
chr2 (40-94)||(14796916-14796970)
chr2 (73-103)||(32457179-32457209)
chr2 (2-103)||(28248966-28249067)
chr2 (2-103)||(45034412-45034512)
chr2 (16-100)||(4410813-4410897)
chr2 (30-94)||(5915151-5915215)
chr2 (21-101)||(8717540-8717620)
chr2 (23-95)||(10204961-10205033)
chr2 (23-103)||(11030225-11030305)
chr2 (21-101)||(14803066-14803146)
chr2 (63-103)||(20218617-20218657)
[»] chr4 (26 HSPs)
chr4 (18-101)||(43117889-43117972)
chr4 (23-103)||(40780283-40780362)
chr4 (2-101)||(3043806-3043904)
chr4 (22-101)||(42299290-42299369)
chr4 (1-103)||(4386149-4386251)
chr4 (61-103)||(36866886-36866928)
chr4 (1-103)||(44111778-44111880)
chr4 (63-104)||(19936564-19936605)
chr4 (66-103)||(42169121-42169158)
chr4 (61-101)||(29910633-29910673)
chr4 (22-101)||(22295800-22295879)
chr4 (18-101)||(33615809-33615892)
chr4 (2-101)||(42804270-42804368)
chr4 (18-104)||(30191926-30192012)
chr4 (23-92)||(5418704-5418773)
chr4 (8-101)||(5924515-5924608)
chr4 (2-103)||(21554142-21554242)
chr4 (30-103)||(26066411-26066484)
chr4 (42-103)||(34226420-34226480)
chr4 (2-103)||(43020770-43020870)
chr4 (23-88)||(52072799-52072864)
chr4 (38-103)||(52072801-52072866)
chr4 (28-84)||(30990628-30990684)
chr4 (68-104)||(39993118-39993154)
chr4 (73-101)||(45096609-45096637)
chr4 (8-104)||(52136731-52136827)
[»] chr1 (22 HSPs)
chr1 (30-101)||(48377825-48377896)
chr1 (18-103)||(44939099-44939184)
chr1 (2-101)||(15285471-15285570)
chr1 (9-103)||(25021264-25021358)
chr1 (21-103)||(37178943-37179025)
chr1 (23-103)||(519866-519946)
chr1 (55-95)||(27069214-27069254)
chr1 (18-101)||(15699494-15699577)
chr1 (21-103)||(1599060-1599142)
chr1 (32-90)||(3298794-3298852)
chr1 (23-89)||(10015146-10015212)
chr1 (39-101)||(10367842-10367904)
chr1 (73-103)||(25021316-25021346)
chr1 (63-105)||(39619219-39619261)
chr1 (1-75)||(47883976-47884050)
chr1 (23-101)||(49944868-49944946)
chr1 (21-102)||(8352164-8352245)
chr1 (18-103)||(26070854-26070939)
chr1 (18-103)||(27422940-27423025)
chr1 (63-103)||(10506289-10506329)
chr1 (2-50)||(33018255-33018303)
chr1 (63-103)||(50155373-50155413)
[»] chr7 (16 HSPs)
chr7 (18-104)||(8566113-8566199)
chr7 (38-103)||(2399985-2400050)
chr7 (18-90)||(2610217-2610289)
chr7 (23-103)||(40362005-40362085)
chr7 (16-104)||(45123273-45123361)
chr7 (71-103)||(48445993-48446025)
chr7 (65-103)||(16861545-16861583)
chr7 (1-103)||(41850609-41850711)
chr7 (71-101)||(47538791-47538821)
chr7 (71-101)||(47545348-47545378)
chr7 (18-103)||(7456452-7456537)
chr7 (18-103)||(36245409-36245494)
chr7 (62-103)||(37491302-37491343)
chr7 (23-103)||(1366628-1366707)
chr7 (71-103)||(28936087-28936119)
chr7 (71-103)||(40362003-40362035)
[»] scaffold0025 (1 HSPs)
scaffold0025 (22-101)||(65985-66064)
[»] scaffold0002 (1 HSPs)
scaffold0002 (61-103)||(423321-423363)


Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 13417436 - 13417653
Alignment:
Q  9 aagatacagttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagtttaaa 108  Q
    |||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||| ||||||||||||||||||||||||||||||||||||  |      
T  13417436 aagatacagttgattttttaaattcatttaataattgatgcatcaggtttaaaatataaactaaatacatcaattattcaataaatctaaaaagtcgacg 13417535  T
Q  109 gagaaagtatttccattttctttaatcgtt-aaaggaattgcgagcacaattaaacgtgaaaaatatctccaattaattttgttcaaagttcaaacatta 207  Q
    ||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  13417536 gaggaagtatttccattttctttaattgttaaaaggaattgcgagcacaattaaacgtgaaaaatatctccaattaattttgttcaaagttcaaacattg 13417635  T
Q  208 cattcatttttcagtgat 225  Q
    ||||||||||| ||||||    
T  13417636 cattcattttttagtgat 13417653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 5483988 - 5483894
Alignment:
Q  9 aagatacagttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||| ||| |||| |||||| |||| || ||||||| ||||||  | | |||||||||||| |||||||||||||||| ||||||| ||||||||    
T  5483988 aagaaacaattgactttttagattcgttgaataattaatgtatttagtctaaaatatagacaaaatacatcaattatttaataaatttaaaaagt 5483894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 1158363 - 1158277
Alignment:
Q  18 ttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagtt 104  Q
    |||| ||||||||| |||| ||||||||||||||    | || |||||||||  ||||||| ||||||||||| |||||||||||||    
T  1158363 ttgactttttaaatacattgaataattgatgtatttggtctagaatatagaccgaatacattaattattcaatgaatctaaaaagtt 1158277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 17265839 - 17265754
Alignment:
Q  18 ttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    ||||||||||||||||||  | |||||||||||||   | || |||||||||||||||| ||| |||| |||| |||| |||||||    
T  17265839 ttgattttttaaattcatcgagtaattgatgtatcttgtctagaatatagactaaatacgtcatttatgcaatgaatcaaaaaagt 17265754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 7649913 - 7649833
Alignment:
Q  22 ttttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaag 102  Q
    ||||||||||||||| |||||||||| |||    | || | | ||||| |||||||||||||||||||| |||||||||||    
T  7649913 ttttttaaattcattgaataattgatttatttggtatatattttagaccaaatacatcaattattcaatgaatctaaaaag 7649833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 8381062 - 8380991
Alignment:
Q  30 attcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    ||||||| |||||||||||||||  ||||| ||||||    |||||||| ||||||||||||||||| ||||    
T  8381062 attcattgaataattgatgtatctgatttataatatatttcaaatacattaattattcaataaatctgaaaa 8380991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 7649834 - 7649912
Alignment:
Q  23 tttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    |||||| ||||||| ||||||||||||||    | ||||||||| || ||||| |||||||||||||| ||| ||||||    
T  7649834 tttttagattcattgaataattgatgtatttggtctaaaatatataccaaataaatcaattattcaatgaatttaaaaa 7649912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 30627836 - 30627930
Alignment:
Q  1 ttatttttaagatacagttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatc 95  Q
    |||||| ||||| | | ||||||||||| ||| ||| | |||||||||||||   | |||||||||||| |||||||||| |||| |||| ||||    
T  30627836 ttatttataagaaaaatttgattttttatatttattgagtaattgatgtatcttgtctaaaatatagaccaaatacatcatttatgcaatgaatc 30627930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 12450393 - 12450466
Alignment:
Q  30 attcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    ||||||| ||||||||||||||   || ||||||||||| ||||||||||| |||| |||| |||  |||||||    
T  12450393 attcattgaataattgatgtattttatctaaaatatagattaaatacatcatttatgcaatgaattaaaaaagt 12450466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 8646791 - 8646712
Alignment:
Q  23 tttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||||| ||| ||||||||||||||||| | || ||| || |||||| |||| |||||| |||||||| |||| |||||||    
T  8646791 tttttagatttatttaataattgatgtacctaacttagaa-atagaccaaatgcatcaactattcaatgaatcaaaaaagt 8646712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 30438771 - 30438859
Alignment:
Q  16 agttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagtt 104  Q
    |||||| |||||| ||||||  ||||||| ||||||   |||  |||||||||||| |||||||| |||| ||||||| | ||||||||    
T  30438771 agttgactttttagattcatagaataattaatgtattttattgtaaatatagactagatacatcacttatacaataaaccaaaaaagtt 30438859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 19649706 - 19649612
Alignment:
Q  9 aagatacagttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||| ||| ||||||||||| ||||||| | ||||||||||||    | ||||||||||||||||||||||||||||||||| |||| |||||||    
T  19649706 aagaaacatttgattttttagattcattgagtaattgatgtattcggtctaaaatatagactaaatacatcaattattcaatgaatcaaaaaagt 19649612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 32711315 - 32711235
Alignment:
Q  23 tttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||||| ||||||| |||||||||||||||   | || ||||||| | |||||||||||||||||||| || |||||||||    
T  32711315 tttttagattcattgaataattgatgtatctggtctataatataggccaaatacatcaattattcaatgaacctaaaaagt 32711235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 52864986 - 52865066
Alignment:
Q  23 tttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||||| ||||||| | |||||||||||||  || |||||||||||||||||| |||| |||| |||| |||| |||||||    
T  52864986 tttttagattcattgagtaattgatgtatcttatctaaaatatagactaaatatatcatttatgcaatgaatcaaaaaagt 52865066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 45010865 - 45010783
Alignment:
Q  21 attttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||||||| ||| ||| ||||||||||||||| | |||| ||||||||| | | |||||| |||| ||||||||| |||||||    
T  45010865 attttttagatttattgaataattgatgtatctagtttagaatatagaccacaaacatcatttatacaataaatcaaaaaagt 45010783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 48593177 - 48593255
Alignment:
Q  23 tttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    |||||| || |||| |||||||||||||||   | || ||||||||| |||||||| ||||||||||| ||||||||||    
T  48593177 tttttagatacattgaataattgatgtatcgggtctagaatatagaccaaatacataaattattcaatgaatctaaaaa 48593255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 51723392 - 51723494
Alignment:
Q  2 tatttttaagatacagttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    ||||| ||||| | ||||||||||||| ||||||| | ||||| ||||||   || || ||||||||||||||| |||| |||| |||| |||| |||||    
T  51723392 tatttataagaaaaagttgattttttagattcattgagtaattaatgtatttgatatagaatatagactaaatatatcatttatacaatgaatcaaaaaa 51723491  T
Q  102 gtt 104  Q
    |||    
T  51723492 gtt 51723494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 2313032 - 2312951
Alignment:
Q  21 attttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaag 102  Q
    |||||| ||||||||| |||||||||||||||  || || ||||||| | | |||||||  ||||||||||||||| |||||    
T  2313032 atttttcaaattcattgaataattgatgtatctgatatataatatagtccagatacatcggttattcaataaatctgaaaag 2312951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 47218865 - 47218817
Alignment:
Q  38 aataattgatgtatcaaatttaaaatatagactaaatacatcaattatt 86  Q
    |||||| ||||||||| ||||| |||||||| |||||||||||||||||    
T  47218865 aataatcgatgtatcagatttataatatagattaaatacatcaattatt 47218817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 653315 - 653272
Alignment:
Q  58 taaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    |||||| ||||| |||||||||||||||||||||||| ||||||    
T  653315 taaaatttagaccaaatacatcaattattcaataaatttaaaaa 653272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 33371875 - 33371973
Alignment:
Q  2 tatttttaagatacagttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    ||||| ||||| | |||| |||||||||||| ||| ||||||||||||| | |   ||||| |||||| ||||||||||| |||||||| |||| |||||    
T  33371875 tatttataagaaaaagttaattttttaaatttattcaataattgatgtacctagcctaaaa-atagaccaaatacatcaactattcaatgaatcaaaaaa 33371973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 40198408 - 40198510
Alignment:
Q  1 ttatttttaagatacagttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaa 100  Q
    |||||| ||||| ||| |||| |||||  ||||||| ||||||| ||||||    | || ||||| ||| | ||||||||||| ||||||||||||||||    
T  40198408 ttatttataagaaacaattgaatttttttattcattgaataatttatgtattcggtctagaatatcgaccagatacatcaattgttcaataaatctaaaa 40198507  T
Q  101 agt 103  Q
    |||    
T  40198508 agt 40198510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 46354871 - 46354797
Alignment:
Q  23 tttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatcta 97  Q
    |||||| ||| ||| |||||||||| |||||| |||| |||||||  || ||||||||||| || ||||||||||    
T  46354871 tttttagatttattgaataattgatatatcaagtttataatatagtttagatacatcaattgtttaataaatcta 46354797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 49885412 - 49885493
Alignment:
Q  21 attttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||||||| ||||||| ||||||||||||||| | | || || |||||| ||||||||||||||| || | |||| |||||||    
T  49885412 attttttagattcattcaataattgatgtatctagtctagaa-atagaccaaatacatcaattatccacttaatcaaaaaagt 49885493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 2544501 - 2544574
Alignment:
Q  31 ttcatttaataattgatgtatcaaatt-taaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||||| |||||||||||||||   || |||| ||||||| |||||||||| |||| |||| ||||||||||||    
T  2544501 ttcattgaataattgatgtatcttgttataaattatagaccaaatacatcacttatacaatgaatctaaaaagt 2544574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 30672544 - 30672617
Alignment:
Q  23 tttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatct 96  Q
    |||||| ||||||| |||||||||||||||  | ||| ||||||| | ||||| |||| ||||| |||||||||    
T  30672544 tttttagattcattaaataattgatgtatctgaattataatatagtccaaatatatcagttatttaataaatct 30672617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 36571490 - 36571406
Alignment:
Q  16 agttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    |||||| ||||||| |||||| | ||| ||||||||   ||||| | ||||||||| |||||||| ||||| ||||||||||||||    
T  36571490 agttgactttttaagttcattcattaaatgatgtatatgatttata-tatagactacatacatcatttattgaataaatctaaaaa 36571406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 101
Target Start/End: Original strand, 45010830 - 45010863
Alignment:
Q  68 actaaatacatcaattattcaataaatctaaaaa 101  Q
    |||| |||||||||||||||||||||||||||||    
T  45010830 actagatacatcaattattcaataaatctaaaaa 45010863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 25645219 - 25645297
Alignment:
Q  23 tttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||||| ||||||| ||||| ||||||||| |||| | |||||||  ||||||||||| ||||| ||||||| ||||||||    
T  25645219 tttttagattcattcaataaatgatgtatctaatt-ataatatagt-taaatacatcatttattaaataaatataaaaagt 25645297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 27302199 - 27302111
Alignment:
Q  16 agttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagtt 104  Q
    |||||| ||||||  |||||  ||||||| ||||||| ||||  |||||||||||| |||||||| |||| |||| || | ||||||||    
T  27302199 agttgactttttaggttcatagaataattaatgtatctaattgtaaatatagactagatacatcacttatacaatgaaccaaaaaagtt 27302111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 28043501 - 28043401
Alignment:
Q  1 ttatttttaagatacagttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaa 100  Q
    |||||| ||||| ||  |||||| |||| ||||||| ||||||| ||||||    ||||||||||| || |||||| |||||||||  |||||||| |||    
T  28043501 ttatttataagaaactattgattatttagattcattgaataattaatgtatatggtttaaaatatataccaaatacgtcaattattttataaatctcaaa 28043402  T
Q  101 a 101  Q
    |    
T  28043401 a 28043401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 32711277 - 32711317
Alignment:
Q  63 tatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    ||||||| | |||||||||||||||||| ||||||||||||    
T  32711277 tatagaccagatacatcaattattcaatgaatctaaaaagt 32711317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 3236360 - 3236445
Alignment:
Q  18 ttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||| |||||||||||||| ||||||||||||||| | |||||||| ||||| |||||||||| |||| |||| |||  |||||||    
T  3236360 ttgactttttaaattcattgaataattgatgtatctagtttaaaatttagaccaaatacatcatttatacaatgaattaaaaaagt 3236445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 5031499 - 5031579
Alignment:
Q  23 tttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||||||||||||| | |||||||||||||   | || |||||||||||||||||||| |||| |||| |||| |||||||    
T  5031499 tttttaaattcattaagtaattgatgtatcttgtctagaatatagactaaatacatcatttatgcaatgaatcaaaaaagt 5031579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 9812450 - 9812536
Alignment:
Q  16 agttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaag 102  Q
    |||| ||||||||| |||||| ||||| | || |||| |||||  ||||| ||||| |||||||| ||||||||||||| |||||||    
T  9812450 agtttattttttaagttcattcaataaataatatatctaatttttaatattgactatatacatcatttattcaataaatttaaaaag 9812536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 8793747 - 8793834
Alignment:
Q  16 agttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    ||||||| ||||| ||||||| | ||||||||||||    | || |||||||||||||||||||| |||| |||| |||| |||||||    
T  8793747 agttgatattttagattcattgagtaattgatgtatttggtctataatatagactaaatacatcatttatgcaatgaatcaaaaaagt 8793834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 8818755 - 8818696
Alignment:
Q  31 ttcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaat 90  Q
    ||||||||||||||||||||||  || || | |||| |||| ||||||||||||||||||    
T  8818755 ttcatttaataattgatgtatctgatctatattataaactagatacatcaattattcaat 8818696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 29243416 - 29243349
Alignment:
Q  33 catttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaa 100  Q
    |||| |||| ||||| |||||| | | |||||||||| || ||||||||||||| |||||||||||||    
T  29243416 cattaaatatttgatatatcaattattaaatatagaccaattacatcaattattaaataaatctaaaa 29243349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 13831437 - 13831475
Alignment:
Q  65 tagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  13831437 tagactaaatacatcaattatttaatgaatctaaaaagt 13831475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 24915282 - 24915205
Alignment:
Q  23 tttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    |||||| ||||||| ||||||||||||||| |  ||| || |||||| |||||||||||||||| ||| |||| |||||    
T  24915282 tttttagattcattaaataattgatgtatctagcttagaa-atagacaaaatacatcaattatttaatgaatcaaaaaa 24915205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 34711111 - 34711197
Alignment:
Q  18 ttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagtt 104  Q
    |||| |||||| ||||||| | ||||||||||||    | ||||||||| ||||||||||||| | || ||||||||| ||||||||    
T  34711111 ttgactttttagattcattgagtaattgatgtattttgtctaaaatataaactaaatacatcattaatgcaataaatcaaaaaagtt 34711197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 7693111 - 7693066
Alignment:
Q  58 taaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    ||||||||||||||||||||||| |||| |||| |||| |||||||    
T  7693111 taaaatatagactaaatacatcatttatgcaatgaatcaaaaaagt 7693066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 103
Target Start/End: Original strand, 12958790 - 12958890
Alignment:
Q  2 tatttttaagatacagttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    ||||| ||||| | |||| | |||||| ||||||| ||||||||||||| | |  ||| || |||||| ||||||||||| |||||||| |||| |||||    
T  12958790 tatttataagaaaaagttaactttttagattcattcaataattgatgtacctagcttagaa-atagaccaaatacatcaactattcaatgaatcaaaaaa 12958888  T
Q  102 gt 103  Q
    ||    
T  12958889 gt 12958890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 14916422 - 14916467
Alignment:
Q  49 tatcaaatttaaaatatagactaaatacatcaattattcaataaat 94  Q
    |||| |||||| |||||| ||||||||||||||||||| |||||||    
T  14916422 tatctaatttataatatacactaaatacatcaattatttaataaat 14916467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 33057964 - 33057903
Alignment:
Q  38 aataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaa 99  Q
    |||||||||||||||  | ||| ||||||| | |||||||||||||||| ||| ||||||||    
T  33057964 aataattgatgtatctgaattataatatagtccaaatacatcaattatttaatgaatctaaa 33057903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 101
Target Start/End: Original strand, 13639415 - 13639443
Alignment:
Q  73 atacatcaattattcaataaatctaaaaa 101  Q
    |||||||||||||||||||||||||||||    
T  13639415 atacatcaattattcaataaatctaaaaa 13639443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 101
Target Start/End: Original strand, 13739828 - 13739856
Alignment:
Q  73 atacatcaattattcaataaatctaaaaa 101  Q
    |||||||||||||||||||||||||||||    
T  13739828 atacatcaattattcaataaatctaaaaa 13739856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 27988155 - 27988191
Alignment:
Q  68 actaaatacatcaattattcaataaatctaaaaagtt 104  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  27988155 actaaatacattaattattcaatgaatctaaaaagtt 27988191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 28045457 - 28045493
Alignment:
Q  68 actaaatacatcaattattcaataaatctaaaaagtt 104  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  28045457 actaaatacattaattattcaatgaatctaaaaagtt 28045493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 44580013 - 44579925
Alignment:
Q  16 agttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagtt 104  Q
    |||||| ||||||| |||||  ||||||| |||||||  |||  |||||||||||| ||| || | |||| ||||||||| ||||||||    
T  44580013 agttgactttttaagttcatagaataattaatgtatcttattgtaaatatagactagatatattacttatacaataaatcaaaaaagtt 44579925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 26327571 - 26327650
Alignment:
Q  23 tttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||||| ||||||| ||||||||||||| | ||| ||||| |||||| ||||||||||| ||||||||||||| |||||||    
T  26327571 tttttagattcattcaataattgatgtacctaatctaaaa-atagaccaaatacatcaactattcaataaatcaaaaaagt 26327650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 38826060 - 38826142
Alignment:
Q  21 attttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||||||||||||||| ||||| | ||||||||||||||  ||||||| || |||||| | |||| |||| ||||||||||||    
T  38826060 attttttaaattcattgaataactaatgtatcaaatttatgatatagattatatacataagttatacaatgaatctaaaaagt 38826142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 1420769 - 1420692
Alignment:
Q  24 ttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    ||||||||| |||||||||||||||||||  || || | ||||||| |||||||| | || |||||||||||||||||    
T  1420769 ttttaaatttatttaataattgatgtatcttatctatattatagaccaaatacataagttgttcaataaatctaaaaa 1420692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 5004058 - 5004006
Alignment:
Q  38 aataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaat 90  Q
    ||||||| ||||||| |||||| |||||||||||||||||||| |||||||||    
T  5004058 aataattaatgtatctaatttataatatagactaaatacatcagttattcaat 5004006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 919754 - 919675
Alignment:
Q  24 ttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    ||||| ||||||| | ||||||||||||| | | || ||||||||| |||||||||| ||||| ||| |||| |||||||    
T  919754 ttttagattcattgagtaattgatgtatctagtatagaatatagaccaaatacatcatttattgaatgaatcaaaaaagt 919675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 1950700 - 1950622
Alignment:
Q  21 attttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaa 99  Q
    |||||||||||||||| ||||| |||||||||    ||| ||||||| | |||||||||| ||||| ||| ||||||||    
T  1950700 attttttaaattcattaaataactgatgtatctctattataatatagtccaaatacatcagttatttaatgaatctaaa 1950622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 12094316 - 12094270
Alignment:
Q  58 taaaatatagactaaatacatcaattattcaataaatctaaaaagtt 104  Q
    |||||||||||| | ||||||||| |||| |||||||||||||||||    
T  12094316 taaaatatagaccacatacatcaactatttaataaatctaaaaagtt 12094270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 32459294 - 32459228
Alignment:
Q  35 tttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    |||||||||| || ||||  ||||| ||||||||||| |||||||||| ||| ||| ||||||||||    
T  32459294 tttaataattaatatatctgatttataatatagactacatacatcaataatttaatgaatctaaaaa 32459228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 103
Target Start/End: Complemental strand, 1015289 - 1015189
Alignment:
Q  2 tatttttaagatacagttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    ||||| ||||| | |||| | |||||| ||||||| |||||| |||||| | || ||| || |||||| ||||||||||| |||||||| |||| |||||    
T  1015289 tatttataagaaaaagttaactttttagattcattcaataatcgatgtacctaacttagaa-atagaccaaatacatcaactattcaatgaatcaaaaaa 1015191  T
Q  102 gt 103  Q
    ||    
T  1015190 gt 1015189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 22398114 - 22398073
Alignment:
Q  63 tatagactaaatacatcaattattcaataaatctaaaaagtt 104  Q
    ||||||||| |||||  |||||||||||||||||||||||||    
T  22398114 tatagactatatacaataattattcaataaatctaaaaagtt 22398073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 28499853 - 28499894
Alignment:
Q  63 tatagactaaatacatcaattattcaataaatctaaaaagtt 104  Q
    |||||| ||||||||| |||||||||||| ||||||||||||    
T  28499853 tatagattaaatacattaattattcaatatatctaaaaagtt 28499894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 33102971 - 33102934
Alignment:
Q  64 atagactaaatacatcaattattcaataaatctaaaaa 101  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  33102971 atagactaaatacatcaattatttaataaatttaaaaa 33102934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 892660 - 892580
Alignment:
Q  23 tttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||| ||||||||| |||||  |||||||| | | || | ||||||  |||||||| ||||||||||| ||||||||||||    
T  892660 ttttaaaattcattgaataacggatgtatctagtatatagtatagaacaaatacattaattattcaatgaatctaaaaagt 892580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 12295707 - 12295787
Alignment:
Q  23 tttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||||||||| ||||||||| | ||||||    |||| ||||||||||| |||||| | ||||| ||| ||||||||||||    
T  12295707 tttttaaatttatttaataaattatgtatgtcgtttataatatagactacatacattatttattgaatgaatctaaaaagt 12295787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 21032563 - 21032643
Alignment:
Q  23 tttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||||| || |||| ||||||| ||||||  | | || |||| |||||| |||||| |||||||||||| |||||||||||    
T  21032563 tttttatatacattgaataattaatgtattcagtctataataaagactagatacattaattattcaatatatctaaaaagt 21032643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 37322659 - 37322603
Alignment:
Q  21 attttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaataca 77  Q
    |||||| ||||||||| |||||||||||||||   | |||||||||||||| |||||    
T  37322659 atttttcaaattcattgaataattgatgtatctggtctaaaatatagactagataca 37322603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 40740410 - 40740374
Alignment:
Q  65 tagactaaatacatcaattattcaataaatctaaaaa 101  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  40740410 tagaccaaatacatcaattatttaataaatctaaaaa 40740374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 7833315 - 7833395
Alignment:
Q  21 attttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    |||||||| ||||||| |||||||||||||||  ||||||||||||||  | |||||| || |||| ||||||||||||||    
T  7833315 attttttagattcattgaataattgatgtatctgatttaaaatatagatcagatacattaactatttaataaatctaaaaa 7833395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 9152506 - 9152412
Alignment:
Q  9 aagatacagttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||| ||| |||| |||||| ||||||| | ||||||||||||| | | |||||||||||| |||||||||||||||| ||| | || |||||||    
T  9152506 aagaaacaattgactttttagattcattgagtaattgatgtatctagtctaaaatatagaccaaatacatcaattatttaatgactcaaaaaagt 9152412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 35728578 - 35728499
Alignment:
Q  23 tttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaag 102  Q
    |||||||||||||| |||||||||||||||   |||| ||||||||| ||||| |||| |||| |||| |||| ||||||    
T  35728578 tttttaaattcattgaataattgatgtatcttgtttagaatatagaccaaatatatcatttatgcaatgaatcaaaaaag 35728499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 12486065 - 12486107
Alignment:
Q  61 aatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    ||||||||| |||||||||||||||||||| ||||||||||||    
T  12486065 aatatagaccaaatacatcaattattcaatgaatctaaaaagt 12486107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 41332698 - 41332740
Alignment:
Q  61 aatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    ||||||||| |||||||||||||||||||||||| ||||||||    
T  41332698 aatatagacaaaatacatcaattattcaataaatgtaaaaagt 41332740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 103
Target Start/End: Original strand, 4063286 - 4063386
Alignment:
Q  2 tatttttaagatacagttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    ||||| ||||| | |||| |||||||| ||||||| ||||||||||||| | | | || || |||||| ||||||||||| |||||||| |||| |||||    
T  4063286 tatttataagaaaaagttaattttttagattcattcaataattgatgtacctactctagaa-atagacaaaatacatcaactattcaatgaatcaaaaaa 4063384  T
Q  102 gt 103  Q
    ||    
T  4063385 gt 4063386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 32457331 - 32457246
Alignment:
Q  18 ttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||| |||||| ||||||| | |||||||||||||   | || |||||||||||||||||||| |||| |||| |||| |||||||    
T  32457331 ttgactttttagattcattaagtaattgatgtatcttgtctagaatatagactaaatacatcatttatgcaatgaatcaaaaaagt 32457246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 103
Target Start/End: Complemental strand, 41153245 - 41153144
Alignment:
Q  2 tatttttaagatacagttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    ||||| ||||| | |||||| |||||| ||||||| | ||||||||||||    |||| ||||||||| |||||||||| |||| |||| |||| |||||    
T  41153245 tatttataagaaaaagttgactttttagattcattgagtaattgatgtatttggtttataatatagaccaaatacatcatttatgcaatgaatcaaaaaa 41153146  T
Q  102 gt 103  Q
    ||    
T  41153145 gt 41153144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 43893939 - 43893996
Alignment:
Q  38 aataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatc 95  Q
    ||||| |||||||||  | ||||||||||||| |||||||| ||||||||||||||||    
T  43893939 aataactgatgtatccgacttaaaatatagaccaaatacataaattattcaataaatc 43893996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 14803148 - 14803068
Alignment:
Q  21 attttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    |||||||| ||| | ||||||||||||||||   || || | ||||||  ||||||||||||||||| |||||||||||||    
T  14803148 attttttagatttaattaataattgatgtatttgatctatattatagatcaaatacatcaattattctataaatctaaaaa 14803068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 30435353 - 30435257
Alignment:
Q  5 ttttaagatacagttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    |||||||| | |||| | ||||||| || || |||||| ||||||||  |||||| | ||  |||||||||||||| ||||| ||||||||||||||    
T  30435353 ttttaagagaaagttaactttttaagtttatctaataaatgatgtatttaatttatattagggactaaatacatcatttattgaataaatctaaaaa 30435257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 41205503 - 41205603
Alignment:
Q  1 ttatttttaagatacagttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaa 100  Q
    |||||| ||||| | ||||||||||||| ||  ||| ||||||| ||||||| | |  |||||||| || |||||||| ||||||| |||| ||||||||    
T  41205503 ttatttataagagaaagttgattttttagatatattgaataatttatgtatctagtaaaaaatataaaccaaatacataaattatttaatatatctaaaa 41205602  T
Q  101 a 101  Q
    |    
T  41205603 a 41205603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 38983119 - 38983032
Alignment:
Q  16 agttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    ||||||||||||| |||||||   |||||||||||||   | || ||||||||| |||||||||| |||| |||| |||| |||||||    
T  38983119 agttgattttttagattcattgtgtaattgatgtatcttgtctagaatatagacaaaatacatcatttatgcaatgaatcaaaaaagt 38983032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 2429139 - 2429097
Alignment:
Q  62 atatagactaaatacatcaattattcaataaatctaaaaagtt 104  Q
    ||||||||||||||||||||||||| ||| ||| |||||||||    
T  2429139 atatagactaaatacatcaattatttaattaatataaaaagtt 2429097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 103
Target Start/End: Original strand, 8687316 - 8687346
Alignment:
Q  73 atacatcaattattcaataaatctaaaaagt 103  Q
    |||||||||||||||||||||||||||||||    
T  8687316 atacatcaattattcaataaatctaaaaagt 8687346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 14796970 - 14796916
Alignment:
Q  40 taattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaat 94  Q
    |||||||||||||  ||||| ||||||||||| |||||||| ||||| |||||||    
T  14796970 taattgatgtatctgatttataatatagactagatacatcatttattaaataaat 14796916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 103
Target Start/End: Complemental strand, 32457209 - 32457179
Alignment:
Q  73 atacatcaattattcaataaatctaaaaagt 103  Q
    |||||||||||||||||||||||||||||||    
T  32457209 atacatcaattattcaataaatctaaaaagt 32457179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 103
Target Start/End: Complemental strand, 28249067 - 28248966
Alignment:
Q  2 tatttttaagatacagttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    ||||| ||||| | |||||| |||||| ||||||| ||||||| ||||||    | || |||||||||||||||||| | |||| |||| |||| |||||    
T  28249067 tatttataagaaaaagttgactttttagattcattaaataattaatgtatttggtatagaatatagactaaatacattatttatgcaattaatcaaaaaa 28248968  T
Q  102 gt 103  Q
    ||    
T  28248967 gt 28248966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 103
Target Start/End: Original strand, 45034412 - 45034512
Alignment:
Q  2 tatttttaagatacagttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    ||||| ||||| | |||| | |||||| ||||||| ||||||||||||| | ||  || || |||||| ||||||||||| |||||||| |||| |||||    
T  45034412 tatttataagaaaaagttaactttttagattcattcaataattgatgtacctaacctagaa-atagaccaaatacatcaactattcaatgaatcaaaaaa 45034510  T
Q  102 gt 103  Q
    ||    
T  45034511 gt 45034512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 4410897 - 4410813
Alignment:
Q  16 agttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaa 100  Q
    |||||| |||||| |||||||   ||||| |||||||   |||||||||||||  |||||||||| |||| ||||||||| ||||    
T  4410897 agttgactttttagattcattgtgtaattaatgtatcttgtttaaaatatagatcaaatacatcatttatgcaataaatcaaaaa 4410813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 5915215 - 5915151
Alignment:
Q  30 attcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaat 94  Q
    ||||||| ||||||| |||| |||||||||   ||||| || |||||| ||||||||||||||||    
T  5915215 attcattaaataatttatgtttcaaatttatcttatagtctcaatacaacaattattcaataaat 5915151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 8717620 - 8717540
Alignment:
Q  21 attttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    ||||||||||| |||| ||||| | ||||||| | | || |||| ||||||||||||| ||||||| |||  |||||||||    
T  8717620 attttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatctaaaaa 8717540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 10204961 - 10205033
Alignment:
Q  23 tttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatc 95  Q
    |||||| ||||||| |  ||||||||||||   | ||||||||||||||||||||||| |||| |||| ||||    
T  10204961 tttttagattcattgagcaattgatgtatcttgtctaaaatatagactaaatacatcatttatacaatgaatc 10205033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 11030305 - 11030225
Alignment:
Q  23 tttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||||| ||||||| | |||||||||||||  || || ||||||||| |||||||||| ||||  ||| |||| |||||||    
T  11030305 tttttagattcattgagtaattgatgtatctgatatagaatatagaccaaatacatcatttatgtaatgaatcaaaaaagt 11030225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 14803066 - 14803146
Alignment:
Q  21 attttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    |||||||| ||| ||  ||||||||||||||   || || ||||||||  |||||||||||||||| | ||||||||||||    
T  14803066 attttttagatttatagaataattgatgtatttgatctataatatagatcaaatacatcaattattaattaaatctaaaaa 14803146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 20218617 - 20218657
Alignment:
Q  63 tatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    ||||||||  |||||||||||||||||| ||||||||||||    
T  20218617 tatagactggatacatcaattattcaatgaatctaaaaagt 20218657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 43117972 - 43117889
Alignment:
Q  18 ttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    ||||||||||| ||||||| ||||||||||||||    | |||||||||||| |||||||||| |||| ||||||||| |||||    
T  43117972 ttgattttttacattcattgaataattgatgtatttggtataaaatatagaccaaatacatcatttatgcaataaatcaaaaaa 43117889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 40780362 - 40780283
Alignment:
Q  23 tttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||||||||| ||| ||||||||||||||| | ||||||| ||||| |||||||||||| |||| ||| |||| |||||||    
T  40780362 tttttaaattaattcaataattgatgtatctagtttaaaa-atagattaaatacatcaactattgaatgaatcaaaaaagt 40780283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 3043806 - 3043904
Alignment:
Q  2 tatttttaagatacagttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    ||||| ||||| | |||| |||||||| ||||||| ||||||||||||| | | | ||||| |||||| ||||||||||| |||||||| |||| |||||    
T  3043806 tatttataagaaaaagttaattttttagattcattcaataattgatgtacctagtctaaaa-atagaccaaatacatcaactattcaatgaatcaaaaaa 3043904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 42299290 - 42299369
Alignment:
Q  22 ttttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    |||||||| |||||| ||||||| ||| ||| |||  |||||| | || |||||||| ||||||||||||||||||||||    
T  42299290 ttttttaagttcattgaataattaatgcatctaatacaaaataaaaaccaaatacattaattattcaataaatctaaaaa 42299369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 4386149 - 4386251
Alignment:
Q  1 ttatttttaagatacagttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaa 100  Q
    |||||| ||||| | | |||| |||||||||||||| | ||||||||||||   || || |||||||||||||||||||| ||||  ||| |||| ||||    
T  4386149 ttatttataagaaaaatttgactttttaaattcattaagtaattgatgtattttatctacaatatagactaaatacatcatttatgtaatgaatcaaaaa 4386248  T
Q  101 agt 103  Q
    |||    
T  4386249 agt 4386251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 36866928 - 36866886
Alignment:
Q  61 aatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    ||||||||| ||||||||||||||||||||||||||| |||||    
T  36866928 aatatagacaaaatacatcaattattcaataaatctataaagt 36866886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 44111880 - 44111778
Alignment:
Q  1 ttatttttaagatacagttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaa 100  Q
    |||||| ||||| | |||||| |||||| ||||||| | |||||||||||||   |||| ||||||||| |||||||||| ||||  ||| |||| ||||    
T  44111880 ttatttataagaaaaagttgactttttagattcattgagtaattgatgtatcttctttagaatatagaccaaatacatcatttatgtaattaatcaaaaa 44111781  T
Q  101 agt 103  Q
    |||    
T  44111780 agt 44111778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 19936564 - 19936605
Alignment:
Q  63 tatagactaaatacatcaattattcaataaatctaaaaagtt 104  Q
    ||||||||| |||||||| |||||||||||||||||||||||    
T  19936564 tatagactagatacatcatttattcaataaatctaaaaagtt 19936605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 42169121 - 42169158
Alignment:
Q  66 agactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||| |||||||||||||||||||||||||||||||||    
T  42169121 agacaaaatacatcaattattcaataaatctaaaaagt 42169158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 29910633 - 29910673
Alignment:
Q  61 aatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    |||||| |||| |||||||||||||||||||||||||||||    
T  29910633 aatatatactagatacatcaattattcaataaatctaaaaa 29910673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 22295879 - 22295800
Alignment:
Q  22 ttttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    ||||||| ||||||| |||| || |||||||  |||||||||  ||| |||| |||| |||||||||||||| |||||||    
T  22295879 ttttttagattcattgaatatttaatgtatctgatttaaaatcaagattaaaaacattaattattcaataaacctaaaaa 22295800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 33615809 - 33615892
Alignment:
Q  18 ttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    ||||||||||| ||||||| | ||||| |||||||  |||  |||||||||||| |||||||| |||  |||| ||||||||||    
T  33615809 ttgattttttagattcattgagtaattaatgtatcttattgtaaatatagactagatacatcacttacacaatgaatctaaaaa 33615892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 42804270 - 42804368
Alignment:
Q  2 tatttttaagatacagttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    ||||| ||||| | |||| | |||||| ||||||| ||||||||||||| | |||||| || |||||| ||||||||||| |||| ||| |||| |||||    
T  42804270 tatttataagaaaaagttaactttttagattcattcaataattgatgtacctaatttagaa-atagaccaaatacatcaactatttaatgaatcaaaaaa 42804368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 30191926 - 30192012
Alignment:
Q  18 ttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagtt 104  Q
    ||||||||||| ||||||| | ||||||||||||    | || ||||||||| |||||||||| |||| |||| |||| ||||||||    
T  30191926 ttgattttttagattcattgagtaattgatgtattttgtctagaatatagaccaaatacatcatttatgcaatgaatcaaaaaagtt 30192012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 5418773 - 5418704
Alignment:
Q  23 tttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataa 92  Q
    |||| ||||| ||| || ||||||| |||| | |||| |||| ||||||||||||| |||||||||||||    
T  5418773 ttttgaaatttattgaacaattgatctatcgattttataataaagactaaatacattaattattcaataa 5418704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 5924515 - 5924608
Alignment:
Q  8 taagatacagttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    ||||||| |||| |||||||||||||||| ||||| | ||||||| ||| || | ||   |||| |||||| | ||||||||||||| ||||||    
T  5924515 taagataaagttaattttttaaattcattcaataaataatgtatctaatctatattaagaactacatacattatttattcaataaatttaaaaa 5924608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 103
Target Start/End: Complemental strand, 21554242 - 21554142
Alignment:
Q  2 tatttttaagatacagttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    ||||| ||||| | ||||||||||||| ||||||| | ||||| ||||||   || || ||||||||| |||||||||| |||| |||| |||| |||||    
T  21554242 tatttataagaaaaagttgattttttagattcattgagtaattaatgtat-tgatatagaatatagaccaaatacatcatttatgcaatgaatcgaaaaa 21554144  T
Q  102 gt 103  Q
    ||    
T  21554143 gt 21554142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 26066411 - 26066484
Alignment:
Q  30 attcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    ||||||| |||||||||||||||   | || ||||||||| | |||||||| ||||| ||| ||||||||||||    
T  26066411 attcattgaataattgatgtatccggtctagaatatagaccagatacatcagttatttaatgaatctaaaaagt 26066484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 34226480 - 34226420
Alignment:
Q  42 attgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||||| |||| ||| ||||| |||||| |||||||||||||||||||| |||| |||||||    
T  34226480 attgatttatctaatctaaaa-atagaccaaatacatcaattattcaatgaatcaaaaaagt 34226420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 103
Target Start/End: Original strand, 43020770 - 43020870
Alignment:
Q  2 tatttttaagatacagttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    ||||| ||||| | |||| | |||||| ||||||| ||||||||||||| | ||  || || |||||| ||||||||||| |||||||| |||| |||||    
T  43020770 tatttataagaaaaagttaactttttagattcattcaataattgatgtacctaacctagaa-atagaccaaatacatcaactattcaatgaatcaaaaaa 43020868  T
Q  102 gt 103  Q
    ||    
T  43020869 gt 43020870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 52072864 - 52072799
Alignment:
Q  23 tttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattca 88  Q
    |||||| ||| ||| ||||| ||||||||| |||||| |||||| | || ||||||||||||||||    
T  52072864 tttttagattaattgaataactgatgtatctaatttataatatatattagatacatcaattattca 52072799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 52072801 - 52072866
Alignment:
Q  38 aataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    ||||||||||||||| ||| || | |||| | || |||||||| ||||||||| ||||||||||||    
T  52072801 aataattgatgtatctaatatatattataaattagatacatcagttattcaattaatctaaaaagt 52072866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 30990628 - 30990684
Alignment:
Q  28 aaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaatta 84  Q
    ||||||||| ||||| | ||||||| | |||  ||||||||||||||||||||||||    
T  30990628 aaattcattgaataactaatgtatctagtttgtaatatagactaaatacatcaatta 30990684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 39993118 - 39993154
Alignment:
Q  68 actaaatacatcaattattcaataaatctaaaaagtt 104  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  39993118 actaaatacattaattattcaatgaatctaaaaagtt 39993154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 101
Target Start/End: Complemental strand, 45096637 - 45096609
Alignment:
Q  73 atacatcaattattcaataaatctaaaaa 101  Q
    |||||||||||||||||||||||||||||    
T  45096637 atacatcaattattcaataaatctaaaaa 45096609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 52136827 - 52136731
Alignment:
Q  8 taagatacagttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagtt 104  Q
    ||||| ||| |||||||||| | |||||  ||||||| |||||||   ||  ||||||||||||||||||||| |||  |||| || ||||||||||    
T  52136827 taagaaacaattgatttttttagttcatagaataattaatgtatcttgttataaatatagactaaatacatcacttacacaatgaacctaaaaagtt 52136731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 48377896 - 48377825
Alignment:
Q  30 attcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    ||||||| ||||| ||| ||||   ||||| |||||||||||||||||||||||||||||||||||| ||||    
T  48377896 attcattgaataagtgacgtatttgatttataatatagactaaatacatcaattattcaataaatctgaaaa 48377825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 44939184 - 44939099
Alignment:
Q  18 ttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    ||||||||||| ||||||| | ||||||||||||| ||| || ||||||||| |||||||||| |||| |||| |||  |||||||    
T  44939184 ttgattttttagattcattgagtaattgatgtatctaatctagaatatagaccaaatacatcatttatacaatgaataaaaaaagt 44939099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 15285570 - 15285471
Alignment:
Q  2 tatttttaagatacagttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    ||||| ||||| ||| ||||||||||| ||| ||| ||||||||||||||   || |  ||||| ||  | |||||||||||||||||||||||||||||    
T  15285570 tatttataagagacacttgattttttagattgattgaataattgatgtatttgatcttgaatatggatcagatacatcaattattcaataaatctaaaaa 15285471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 25021358 - 25021264
Alignment:
Q  9 aagatacagttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||| ||| |||| |||||| ||| ||| |||||||||||||||    ||| |||||   |||||||||||||||||||||| ||||||||||||    
T  25021358 aagaaacaattgactttttagatttattgaataattgatgtatccggattagaatatcagctaaatacatcaattattcaatgaatctaaaaagt 25021264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 37178943 - 37179025
Alignment:
Q  21 attttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||| |||||||||||   ||||| |||||||   | ||||||||||||||||||||||| |||| ||||||||| |||||||    
T  37178943 atttattaaattcattgtgtaattaatgtatcttgtctaaaatatagactaaatacatcatttatacaataaatcaaaaaagt 37179025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 519946 - 519866
Alignment:
Q  23 tttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||||| ||||||| | |||||||||||||  || || ||||||||  |||||||||| |||| ||||||||| |||||||    
T  519946 tttttagattcattgagtaattgatgtatcttatctagaatatagatcaaatacatcatttatacaataaatcaaaaaagt 519866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 27069214 - 27069254
Alignment:
Q  55 atttaaaatatagactaaatacatcaattattcaataaatc 95  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  27069214 atttagaatatagactaaatatatcaattattcaataaatc 27069254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 15699494 - 15699577
Alignment:
Q  18 ttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    ||||||||||| ||||||| | ||||| |||||||   ||  |||||||||||| |||||||| |||| ||||||| |||||||    
T  15699494 ttgattttttagattcattgagtaattaatgtatcttgttgtaaatatagactagatacatcacttatacaataaacctaaaaa 15699577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 1599060 - 1599142
Alignment:
Q  21 attttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||||||| ||||||| ||| ||| |||||||  || || | |||||||||||||||| | ||||| || |||||||||||||    
T  1599060 attttttagattcattaaatgattaatgtatctgatatatattatagactaaatacattagttatttaaaaaatctaaaaagt 1599142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 3298852 - 3298794
Alignment:
Q  32 tcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaat 90  Q
    ||||| ||||||||||||||  |||||| ||||||  ||| ||||||||||||||||||    
T  3298852 tcattgaataattgatgtatataatttataatataatctatatacatcaattattcaat 3298794  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 10015146 - 10015212
Alignment:
Q  23 tttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaa 89  Q
    ||||| |||||||| ||||| ||||||||| | | |||||||||||| | |||||||||||| ||||    
T  10015146 tttttgaattcattgaataaatgatgtatccagtctaaaatatagaccagatacatcaattactcaa 10015212  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 10367904 - 10367842
Alignment:
Q  39 ataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    |||||| ||||||| ||| |||| | |||||| ||||||| |||||||||||| |||||||||    
T  10367904 ataatttatgtatctaatctaaattttagactgaatacataaattattcaatatatctaaaaa 10367842  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 103
Target Start/End: Original strand, 25021316 - 25021346
Alignment:
Q  73 atacatcaattattcaataaatctaaaaagt 103  Q
    |||||||||||||||||||||||||||||||    
T  25021316 atacatcaattattcaataaatctaaaaagt 25021346  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 39619261 - 39619219
Alignment:
Q  63 tatagactaaatacatcaattattcaataaatctaaaaagttt 105  Q
    ||||||||| | |||||| ||||||||||||||||||||||||    
T  39619261 tatagactagacacatcatttattcaataaatctaaaaagttt 39619219  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 47883976 - 47884050
Alignment:
Q  1 ttatttttaagatacagttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaata 75  Q
    |||||| ||||| | | |||| |||||||||| ||||| |||||||||||||  |||||| |||||||| |||||    
T  47883976 ttatttataagaaaaaattgactttttaaattaatttagtaattgatgtatcttatttaagatatagacaaaata 47884050  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 49944868 - 49944946
Alignment:
Q  23 tttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    |||||| ||||||| |||||||||||||||   | || ||||||||| |||||||||| |||| |||| |||| |||||    
T  49944868 tttttagattcattgaataattgatgtatcttgtctagaatatagaccaaatacatcatttatacaatgaatcaaaaaa 49944946  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 8352164 - 8352245
Alignment:
Q  21 attttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaag 102  Q
    |||||||| || |||| ||| ||| ||||||| ||| |  | |||||| ||||||||| |||||||||||| ||||||||||    
T  8352164 attttttagatacattgaatgattaatgtatctaatatttattatagaataaatacattaattattcaatatatctaaaaag 8352245  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 26070854 - 26070939
Alignment:
Q  18 ttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||| |||||| ||||||| | |||||||||||||  || || ||||||||| |||||||| | |||| |||| |||| |||||||    
T  26070854 ttgactttttagattcattgagtaattgatgtatcttatctagaatatagaccaaatacattatttatgcaatgaatcaaaaaagt 26070939  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 27423025 - 27422940
Alignment:
Q  18 ttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||| ||||||||| |||| ||||||| ||||||  |||| ||||| |||||   |||||||||||| | |||||||||| |||||    
T  27423025 ttgactttttaaatacattgaataatttatgtatataattcaaaatctagaccggatacatcaattaattaataaatctataaagt 27422940  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 10506289 - 10506329
Alignment:
Q  63 tatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    ||||||| ||||||||||| |||||||| ||||||||||||    
T  10506289 tatagacaaaatacatcaactattcaatgaatctaaaaagt 10506329  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 33018255 - 33018303
Alignment:
Q  2 tatttttaagatacagttgattttttaaattcatttaataattgatgta 50  Q
    ||||| ||||| ||| |||||||||||||||||||  ||||||||||||    
T  33018255 tatttataagaaacatttgattttttaaattcattgcataattgatgta 33018303  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 50155373 - 50155413
Alignment:
Q  63 tatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    ||||||| |||||||||||||| ||||| ||||||||||||    
T  50155373 tatagaccaaatacatcaattactcaatgaatctaaaaagt 50155413  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 8566199 - 8566113
Alignment:
Q  18 ttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagtt 104  Q
    ||||||||||| ||||||| | |||||||||||||   | || ||||||||| |||||||||| |||| |||| |||| ||||||||    
T  8566199 ttgattttttagattcattgagtaattgatgtatcttgtctagaatatagaccaaatacatcatttatgcaatgaatcaaaaaagtt 8566113  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 2400050 - 2399985
Alignment:
Q  38 aataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    ||||||||||||||| | | ||||||||||| ||||||||||| |||| |||| |||| |||||||    
T  2400050 aataattgatgtatctagtctaaaatatagattaaatacatcatttatacaatgaatcaaaaaagt 2399985  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 2610217 - 2610289
Alignment:
Q  18 ttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaat 90  Q
    ||||||||||||||||||| | ||||||||||||    | || |||||||||||||||||||| |||| ||||    
T  2610217 ttgattttttaaattcattgagtaattgatgtatttggtctagaatatagactaaatacatcatttatgcaat 2610289  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 40362005 - 40362085
Alignment:
Q  23 tttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||||| ||||||| ||||||||||||||   ||||| | | ||||| |||||||| ||| |||||||||| |||||||||    
T  40362005 tttttagattcattgaataattgatgtatttgatttatattgtagaccaaatacattaatcattcaataaacctaaaaagt 40362085  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 45123273 - 45123361
Alignment:
Q  16 agttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagtt 104  Q
    |||||| |||||||||||||  ||||||| |||||||  |||  ||||||||| || |||||||| |||| |||| |||| ||||||||    
T  45123273 agttgactttttaaattcatagaataattaatgtatcttattataaatatagattagatacatcacttatacaatgaatcaaaaaagtt 45123361  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 48446025 - 48445993
Alignment:
Q  71 aaatacatcaattattcaataaatctaaaaagt 103  Q
    |||||||||||||||||||||||||||||||||    
T  48446025 aaatacatcaattattcaataaatctaaaaagt 48445993  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 16861583 - 16861545
Alignment:
Q  65 tagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    ||||||| |||||||||||||||||| ||||||||||||    
T  16861583 tagactatatacatcaattattcaatgaatctaaaaagt 16861545  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 41850609 - 41850711
Alignment:
Q  1 ttatttttaagatacagttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaa 100  Q
    |||||| ||||| | |||| |||||||| ||||||| ||||||| ||||||    | |||||||||||  |||||||||| |||| |||| |||| ||||    
T  41850609 ttatttataagaaaaagttaattttttagattcattgaataattaatgtatttggtataaaatatagagcaaatacatcatttatgcaatgaatcaaaaa 41850708  T
Q  101 agt 103  Q
    |||    
T  41850709 agt 41850711  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 101
Target Start/End: Complemental strand, 47538821 - 47538791
Alignment:
Q  71 aaatacatcaattattcaataaatctaaaaa 101  Q
    |||||||||||||||||||||||||||||||    
T  47538821 aaatacatcaattattcaataaatctaaaaa 47538791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 101
Target Start/End: Complemental strand, 47545378 - 47545348
Alignment:
Q  71 aaatacatcaattattcaataaatctaaaaa 101  Q
    |||||||||||||||||||||||||||||||    
T  47545378 aaatacatcaattattcaataaatctaaaaa 47545348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 7456537 - 7456452
Alignment:
Q  18 ttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||| |||||| ||||||| | ||||| |||||||   ||  |||||||||||| |||||||| |||| |||| ||||||||||||    
T  7456537 ttgactttttagattcattgagtaattaatgtatcttgttgtaaatatagactagatacatcatttatacaatgaatctaaaaagt 7456452  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 36245494 - 36245409
Alignment:
Q  18 ttgattttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||| |||||| ||||||| | |||||||||||||   | || ||||||||| |||||||||| |||| |||| |||| |||||||    
T  36245494 ttgactttttagattcattgagtaattgatgtatcttgtctagaatatagaccaaatacatcatttatgcaatgaatcaaaaaagt 36245409  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 37491343 - 37491302
Alignment:
Q  62 atatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||||||||| |||||||| ||||| ||||||||||||||||    
T  37491343 atatagactacatacatcatttatttaataaatctaaaaagt 37491302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 1366707 - 1366628
Alignment:
Q  23 tttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||||| ||||||| ||||||||||||| | | || | || |||||| ||||||||||| |||||||| |||| |||||||    
T  1366707 tttttagattcattcaataattgatgtacctagttcagaa-atagaccaaatacatcaactattcaatgaatcaaaaaagt 1366628  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 28936119 - 28936087
Alignment:
Q  71 aaatacatcaattattcaataaatctaaaaagt 103  Q
    |||||||| ||||||||||||||||||||||||    
T  28936119 aaatacattaattattcaataaatctaaaaagt 28936087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 40362035 - 40362003
Alignment:
Q  71 aaatacatcaattattcaataaatctaaaaagt 103  Q
    |||||||||||||||||||| ||||||||||||    
T  40362035 aaatacatcaattattcaatgaatctaaaaagt 40362003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 66064 - 65985
Alignment:
Q  22 ttttttaaattcatttaataattgatgtatcaaatttaaaatatagactaaatacatcaattattcaataaatctaaaaa 101  Q
    |||||||  |||||| ||||||| ||||||    |||||||||||||||| |||||| |||| |||||| ||||||||||    
T  66064 ttttttaggttcattgaataatttatgtattcggtttaaaatatagactagatacatgaatttttcaatgaatctaaaaa 65985  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 423321 - 423363
Alignment:
Q  61 aatatagactaaatacatcaattattcaataaatctaaaaagt 103  Q
    |||||||||  ||||||||||||||||||| ||||||||||||    
T  423321 aatatagaccgaatacatcaattattcaatgaatctaaaaagt 423363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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