View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3327_high_6 (Length: 480)
Name: NF3327_high_6
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3327_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 8 - 463
Target Start/End: Complemental strand, 32580698 - 32580254
Alignment:
| Q |
8 |
gagcagagaatcttcattgtccattggaataaagggtggtgtatatatgaataaaaagggaacattatagaacaggtcataagaaaaaagagatggctat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32580698 |
gagcagagaatcttcattgtccattggaataaagggtggtgtatatatgaataaaaagggaacattatagaacaggtcataagaaaaaagagatggctat |
32580599 |
T |
|
| Q |
108 |
gaacaggcatcgattgagggaaacgggcgtgaatgtgatgagtggttttcttttgtttgctttcataatgaagtgtttgaatggttataaaaagtcttta |
207 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32580598 |
gaacaggcatcaattgagggaaacgggcgtgaatgtgatgagtggttttcttttgtttactttcataatgaagtgtttgaatggttatgaaaagtcttta |
32580499 |
T |
|
| Q |
208 |
aagttagggttgggacagaccctaaaatcctcgtaaagtgaaagcaaacataggaaaaagataactcaacataagtcattgttgattgctggagattgga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32580498 |
aagttagggttgggacagaccctaaaatcctcgtaaagtgaaagcaaacataggaaaaagataactcaacataagtcattgttgattgctggagattgga |
32580399 |
T |
|
| Q |
308 |
ggagagactgtgtaggtaagcatcataacacgggcatcgatggtttgataagtatataaaaggtttacattgcccaacccaataagcaatgccaccattt |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32580398 |
ggagagactgtgtaggtaagcatcataacacgggcatcgatggtttgataa-----------gtttacattgcccaacccaataagcaatgccaccattt |
32580310 |
T |
|
| Q |
408 |
tgtttcttgtgccattaccccattatagggatgcttcctccgggttgcgtcttact |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32580309 |
tgtttcttgtgccattaccccattatagggatgcttcctccgggttgcgtcttact |
32580254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University