View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3327_high_65 (Length: 203)

Name: NF3327_high_65
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3327_high_65
NF3327_high_65
[»] chr3 (4 HSPs)
chr3 (15-185)||(11015854-11016024)
chr3 (15-185)||(11024866-11025036)
chr3 (15-185)||(11006291-11006461)
chr3 (50-185)||(47452271-47452406)
[»] chr4 (32 HSPs)
chr4 (66-185)||(7822548-7822667)
chr4 (81-183)||(7813061-7813163)
chr4 (32-185)||(7770983-7771136)
chr4 (79-183)||(7800218-7800322)
chr4 (51-185)||(7904611-7904745)
chr4 (32-185)||(7789668-7789821)
chr4 (56-180)||(45372427-45372551)
chr4 (84-184)||(48156825-48156925)
chr4 (16-182)||(48862823-48862992)
chr4 (84-182)||(48735713-48735811)
chr4 (56-184)||(48170956-48171087)
chr4 (50-159)||(48891014-48891123)
chr4 (57-185)||(7238091-7238219)
chr4 (83-183)||(45366618-45366718)
chr4 (82-185)||(7907904-7908007)
chr4 (79-185)||(7774222-7774328)
chr4 (51-185)||(7877299-7877433)
chr4 (51-182)||(48148047-48148181)
chr4 (15-185)||(33134152-33134325)
chr4 (83-185)||(49044626-49044728)
chr4 (68-185)||(48902529-48902646)
chr4 (57-153)||(7765232-7765328)
chr4 (79-183)||(48870123-48870227)
chr4 (79-183)||(48885809-48885913)
chr4 (83-183)||(48898303-48898403)
chr4 (50-186)||(50668621-50668757)
chr4 (84-146)||(47207552-47207614)
chr4 (50-139)||(37827358-37827447)
chr4 (83-140)||(49048996-49049053)
chr4 (50-185)||(49041502-49041637)
chr4 (50-185)||(50251172-50251307)
chr4 (64-123)||(50672161-50672220)
[»] chr8 (6 HSPs)
chr8 (54-174)||(12199897-12200017)
chr8 (54-174)||(12444325-12444445)
chr8 (56-180)||(4032286-4032410)
chr8 (23-149)||(15348477-15348603)
chr8 (66-173)||(12194892-12194999)
chr8 (66-173)||(12439320-12439427)
[»] chr6 (2 HSPs)
chr6 (83-187)||(21015353-21015457)
chr6 (32-185)||(21979990-21980143)
[»] scaffold0508 (1 HSPs)
scaffold0508 (50-148)||(11878-11976)
[»] chr5 (6 HSPs)
chr5 (18-148)||(29695768-29695898)
chr5 (83-146)||(29712866-29712929)
chr5 (50-146)||(29687669-29687765)
chr5 (84-145)||(178638-178699)
chr5 (84-153)||(1812036-1812105)
chr5 (83-146)||(42562728-42562791)
[»] chr1 (5 HSPs)
chr1 (66-148)||(24340030-24340112)
chr1 (50-145)||(24309796-24309891)
chr1 (87-184)||(24415417-24415514)
chr1 (84-140)||(24322086-24322142)
chr1 (66-184)||(24366735-24366853)


Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 11015854 - 11016024
Alignment:
Q  15 atgaacacaattctattagtgtgtgttgcagtgcaaagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacac 114  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |    
T  11015854 atgaacacaattctattagtgtgtgttgcagtggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaacaatgacttacaaacgc 11015953  T
Q  115 acttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcagatac 185  Q
    | || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11015954 atttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcagatac 11016024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 11024866 - 11025036
Alignment:
Q  15 atgaacacaattctattagtgtgtgttgcagtgcaaagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacac 114  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  11024866 atgaacacaattctattagtgtgtgttgcaggggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgc 11024965  T
Q  115 acttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcagatac 185  Q
    | || |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  11024966 atttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtatgatcaattcatgaggcaaatac 11025036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 11006291 - 11006461
Alignment:
Q  15 atgaacacaattctattagtgtgtgttgcagtgcaaagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacac 114  Q
    |||||||||||||||||||||||||||  |||| |||| |||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||    
T  11006291 atgaacacaattctattagtgtgtgttctagtggaaaggtcaaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacac 11006390  T
Q  115 acttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcagatac 185  Q
    |||| ||||||||||| ||||||||||| |||||||||| ||||||||| |||||||||||||||||||||    
T  11006391 acttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcagatac 11006461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 50 - 185
Target Start/End: Original strand, 47452271 - 47452406
Alignment:
Q  50 aagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctc 149  Q
    |||||||||||| | ||||||||||  | |||||||||||||||| |||||||||||| |||  ||||| || |||| ||||||||||||||| ||||||    
T  47452271 aagttcaaaatgtgtttttgcaaagagaggatcagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctc 47452370  T
Q  150 aacatgatttgtattatcaattcatgaggcagatac 185  Q
    | || ||| || |||||||||||| |||| ||||||    
T  47452371 accaagatctggattatcaattcaagaggtagatac 47452406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 1e-30; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 66 - 185
Target Start/End: Complemental strand, 7822667 - 7822548
Alignment:
Q  66 tttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtatta 165  Q
    ||||||||||   |||||||||||||||| |||||||| |||||||||||||| |||||||||||| |||||||||| |||||||||| |||| | ||||    
T  7822667 tttgcaaagtggggatcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaacaagattaggatta 7822568  T
Q  166 tcaattcatgaggcagatac 185  Q
    |||| | |||||||||||||    
T  7822567 tcaaatgatgaggcagatac 7822548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 7813163 - 7813061
Alignment:
Q  81 tcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggca 180  Q
    |||||||||||||| |||||||| |||||||||||||| |||||||||||| |||||||||| |||||||||| |||| | |||||||| ||||||||||    
T  7813163 tcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaacaagattaggattatcaaatcatgaggca 7813064  T
Q  181 gat 183  Q
    |||    
T  7813063 gat 7813061  T

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Target: chr4; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 32 - 185
Target Start/End: Complemental strand, 7771136 - 7770983
Alignment:
Q  32 agtgtgtgttgcagtgcaaagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataaga 131  Q
    |||||||||||||| |  ||||| |||||| || ||| |||||| | |||||||||||||||| ||||| ||||||||||| || || |||| |||||||    
T  7771136 agtgtgtgttgcagaggcaagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacatataaga 7771037  T
Q  132 gacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcagatac 185  Q
    ||||||||||| ||||||| ||  ||||| ||||| | ||||||||||||||||    
T  7771036 gacttcaccggcaacctcatcagaatttggattattagttcatgaggcagatac 7770983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 7800322 - 7800218
Alignment:
Q  79 gatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgagg 178  Q
    ||||||||| |||||| |||||||| |||||||||||||| |||||||||||| |||||||||| |||||||||| |||| | |||||||| ||||||||    
T  7800322 gatcagagacaagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaacaagattaggattatcaaatcatgagg 7800223  T
Q  179 cagat 183  Q
    |||||    
T  7800222 cagat 7800218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 51 - 185
Target Start/End: Complemental strand, 7904745 - 7904611
Alignment:
Q  51 agttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctca 150  Q
    |||| |||||| || |||||||||| | |||||||||||||||| |||||| ||||||||||||| || |||||||||||||||||||| || |||| ||    
T  7904745 agttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaacacatttgaaacgtataagagacttcacaggcaaccaca 7904646  T
Q  151 acatgatttgtattatcaattcatgaggcagatac 185  Q
     || |||||| || ||||||||| |||| ||||||    
T  7904645 tcaagatttgaataatcaattcacgaggaagatac 7904611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 32 - 185
Target Start/End: Complemental strand, 7789821 - 7789668
Alignment:
Q  32 agtgtgtgttgcagtgcaaagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataaga 131  Q
    |||||||||||| | |  ||||| |||||| || ||| |||||| | |||| ||||||| ||| ||||| ||||||||||| || || |||| |||||||    
T  7789821 agtgtgtgttgcggaggcaagttgaaaatgtgaattttcaaagtgaggatcggagataaaagaaaaccaagacttacaaacgcatttgaaacatataaga 7789722  T
Q  132 gacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcagatac 185  Q
    ||||||||||| ||||||| ||  ||||| ||||||| ||||||||||||||||    
T  7789721 gacttcaccggcaacctcatcagaatttggattatcagttcatgaggcagatac 7789668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 56 - 180
Target Start/End: Original strand, 45372427 - 45372551
Alignment:
Q  56 aaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatg 155  Q
    |||||| || |||||||| | | |||||||||||| ||| ||||| |||||||||||||| || ||||||||||||||||||||||| ||||| |  |      
T  45372427 aaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaaccttagtaga 45372526  T
Q  156 atttgtattatcaattcatgaggca 180  Q
    ||||| || ||||||||||||||||    
T  45372527 atttgaatcatcaattcatgaggca 45372551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 84 - 184
Target Start/End: Original strand, 48156825 - 48156925
Alignment:
Q  84 gagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcagat 183  Q
    ||||||||||| ||||| ||||||||||| ||||| ||||||| ||||||||||||||||||||  || | |||||| |||||||||||| | |||||||    
T  48156825 gagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaaccataaaaggatttgaattatcaattcaagtggcagat 48156924  T
Q  184 a 184  Q
    |    
T  48156925 a 48156925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 182
Target Start/End: Complemental strand, 48862992 - 48862823
Alignment:
Q  16 tgaacacaattctattagtgtgtgttgcagtgcaaagttcaaaatgcgattttgcaaagttatgatca---gagataagagataaccatgacttacaaac 112  Q
    |||||| ||||||||  ||||||||||| |    ||||| |||||| || |||||||||| | |||||   ||||||||||| ||||| ||||| |||||    
T  48862992 tgaacataattctatgggtgtgtgttgcggcagtaagttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagacttgcaaac 48862893  T
Q  113 acacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcaga 182  Q
     || || ||||| ||||||||||||||||||||||| | || |||| | || ||||||||||||||||||    
T  48862892 gcatttgaaacgaataagagacttcaccggtaaccttagcaggattaggatgatcaattcatgaggcaga 48862823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 84 - 182
Target Start/End: Original strand, 48735713 - 48735811
Alignment:
Q  84 gagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcaga 182  Q
    ||||||||||| ||||| |||||||||||||| || ||||| |||||||||||||||||||||||||  |  ||||| | |||||| ||||||||||||    
T  48735713 gagataagagaaaaccaagacttacaaacacatttgaaacgaataagagacttcaccggtaacctcagaagaatttgaactatcaactcatgaggcaga 48735811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 56 - 184
Target Start/End: Original strand, 48170956 - 48171087
Alignment:
Q  56 aaaatgcgattttgcaaagttatgatca---gagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaac 152  Q
    ||||||||| |||||||||| | |||||   ||||||||||  ||||| |||||||||||||| || ||||||| |||||||||||||| |||||||| |    
T  48170956 aaaatgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagacttacaaacacatttgaaacgtagaagagacttcaccgataacctcagc 48171055  T
Q  153 atgatttgtattatcaattcatgaggcagata 184  Q
    |  ||||| | |||||||||| ||| ||||||    
T  48171056 agaatttgaactatcaattcaagagccagata 48171087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 50 - 159
Target Start/End: Complemental strand, 48891123 - 48891014
Alignment:
Q  50 aagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctc 149  Q
    ||||| ||||||||| |||||||| | | |||| |||| |||||| ||||| ||||||||||| || || ||||||||||||||||| |||| |||||||    
T  48891123 aagttgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaacgcatttgaaacgtataagagactttaccgataacctc 48891024  T
Q  150 aacatgattt 159  Q
    ||||| ||||    
T  48891023 aacataattt 48891014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 57 - 185
Target Start/End: Original strand, 7238091 - 7238219
Alignment:
Q  57 aaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatga 156  Q
    ||||| || |||||||||| | | |||||||||||||| ||||| |||||||||||||| || ||||  |||||||||||||| || ||||||| ||  |    
T  7238091 aaatgtgaatttgcaaagtgagggtcagagataagagaaaaccaagacttacaaacacatttgaaacagataagagacttcactggcaacctcatcagaa 7238190  T
Q  157 tttgtattatcaattcatgaggcagatac 185  Q
    |||| || || | ||||||||||||||||    
T  7238191 tttggatgattagttcatgaggcagatac 7238219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 83 - 183
Target Start/End: Original strand, 45366618 - 45366718
Alignment:
Q  83 agagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcaga 182  Q
    |||||||||||| |||||  |||||||||| ||||| |||||||||||||||||||| |||||||| |  | |||||| || |||||||||||||| |||    
T  45366618 agagataagagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggtaaccttagtaggatttggatcatcaattcatgaggaaga 45366717  T
Q  183 t 183  Q
    |    
T  45366718 t 45366718  T

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Target: chr4; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 82 - 185
Target Start/End: Complemental strand, 7908007 - 7907904
Alignment:
Q  82 cagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcag 181  Q
    ||||||||||||| ||||||||||||| |||| |||| |||||| |||||||||||||||| |||||||  | ||| || |  |||||||||||||| ||    
T  7908007 cagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccggcaacctcagtaggatctggaaaatcaattcatgaggaag 7907908  T
Q  182 atac 185  Q
    ||||    
T  7907907 atac 7907904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 79 - 185
Target Start/End: Original strand, 7774222 - 7774328
Alignment:
Q  79 gatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgagg 178  Q
    |||||||||||||||| ||||||  |||||||||||| || ||| | ||||||||||||||||| | || || || |||||| || ||||||||||||||    
T  7774222 gatcagagataagagaaaaccatagcttacaaacacatttgaaatgaataagagacttcaccggcagccgcatcaagatttgaataatcaattcatgagg 7774321  T
Q  179 cagatac 185  Q
     ||||||    
T  7774322 aagatac 7774328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 51 - 185
Target Start/End: Complemental strand, 7877433 - 7877299
Alignment:
Q  51 agttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctca 150  Q
    |||| |||||| || |||||||| ||  |||||||||||||||| ||||||  ||||||||  || || ||||||||||||||||||||| | ||||  |    
T  7877433 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccagcaaccaaa 7877334  T
Q  151 acatgatttgtattatcaattcatgaggcagatac 185  Q
     || |||||| || |||||||||||||| ||||||    
T  7877333 tcaggatttggataatcaattcatgaggaagatac 7877299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 51 - 182
Target Start/End: Original strand, 48148047 - 48148181
Alignment:
Q  51 agttcaaaatgcgattttgcaaagttatgatca---gagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacc 147  Q
    ||||||||||| || ||||| |||| | |||||   ||||||||||| ||||| |||||||| ||||| || ||||| |||||||||||||| |||||||    
T  48148047 agttcaaaatgtgaatttgcgaagtgaggatcatgagagataagagaaaaccaagacttacagacacatttgaaacgaataagagacttcactggtaacc 48148146  T
Q  148 tcaacatgatttgtattatcaattcatgaggcaga 182  Q
    |  | | |||||| | ||||||||||| |||||||    
T  48148147 ttgaaaggatttgaactatcaattcatcaggcaga 48148181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 33134152 - 33134325
Alignment:
Q  15 atgaacacaattctattagtgtgtgttgcagtgcaaagttcaaaatgcgattttgcaaagttatgatca---gagataagagataaccatgacttacaaa 111  Q
    |||||||||||| || ||||||||||||  | |   | || |||||| || |||||||||| | |||||   ||||||||||| || || | ||||||||    
T  33134152 atgaacacaattttactagtgtgtgttgaggcggttatttgaaaatgtgaatttgcaaagtgaggatcattagagataagagaaaatcaaggcttacaaa 33134251  T
Q  112 cacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcagatac 185  Q
    | || || ||||| |||||||||||||||||||| |||||||  ||  | || |||||||||||||||||||||    
T  33134252 cgcatttgaaacgaataagagacttcaccggtaatctcaacagaataaggatgatcaattcatgaggcagatac 33134325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 185
Target Start/End: Original strand, 49044626 - 49044728
Alignment:
Q  83 agagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcaga 182  Q
    |||||||||||| |||||| |||||||||||||||| ||||||| ||||||| |||| || ||||||| ||  ||  | || ||||| ||||||||||||    
T  49044626 agagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcactggcaacctcagcagaataaggatgatcaagtcatgaggcaga 49044725  T
Q  183 tac 185  Q
    |||    
T  49044726 tac 49044728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 68 - 185
Target Start/End: Complemental strand, 48902646 - 48902529
Alignment:
Q  68 tgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatc 167  Q
    ||||||||  |||||||| |||||||| ||||| |||||||||||||| || ||||| || |||||||| ||||| |||| |  ||  ||||| || |||    
T  48902646 tgcaaagtgctgatcagatataagagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccggcaaccactgcaaaatttggatgatc 48902547  T
Q  168 aattcatgaggcagatac 185  Q
    ||||||||||| ||||||    
T  48902546 aattcatgaggtagatac 48902529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 153
Target Start/End: Complemental strand, 7765328 - 7765232
Alignment:
Q  57 aaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaaca 153  Q
    ||||| || |||||||||| | |||||||||||| ||| |||||| |||||||||  ||||| |||  ||  |||||||||||||||||||||||||    
T  7765328 aaatgtgaatttgcaaagtgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaaca 7765232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 48870227 - 48870123
Alignment:
Q  79 gatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgagg 178  Q
    |||| ||||||||| | ||||| ||||||||||| || || ||||| |||||||| |||||||||| ||||| ||  ||||| | ||||||||||||| |    
T  48870227 gatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaatttgaactatcaattcatgatg 48870128  T
Q  179 cagat 183  Q
    |||||    
T  48870127 cagat 48870123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 48885913 - 48885809
Alignment:
Q  79 gatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgagg 178  Q
    |||| ||||||||| | ||||| ||||||||||| || || ||||| |||||||| |||||||||| ||||| ||  ||||| | ||||||||||||| |    
T  48885913 gatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaatttgaactatcaattcatgatg 48885814  T
Q  179 cagat 183  Q
    |||||    
T  48885813 cagat 48885809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 183
Target Start/End: Complemental strand, 48898403 - 48898303
Alignment:
Q  83 agagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcaga 182  Q
    ||||||||| || ||||| ||||||||||||||||| |||||| ||||||||||||| ||||  |||| ||  ||||| || | |||||||||||| |||    
T  48898403 agagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagacttcacaggtagactcagcagaatttgaatgaccaattcatgaggaaga 48898304  T
Q  183 t 183  Q
    |    
T  48898303 t 48898303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 186
Target Start/End: Complemental strand, 50668757 - 50668621
Alignment:
Q  50 aagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctc 149  Q
    |||||||||||| || || ||||| || ||||| ||||| ||||| ||||| || |||||||| ||||| |||||||||||| | ||||| || ||||||    
T  50668757 aagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacctc 50668658  T
Q  150 aacatgatttgtattatcaattcatgaggcagatact 186  Q
    | ||  ||||| || |||||||| | | |||||||||    
T  50668657 accaaaatttgaatgatcaattcgtaatgcagatact 50668621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 47207614 - 47207552
Alignment:
Q  84 gagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaac 146  Q
    ||||| ||||| || || ||||| ||||||| |||||||||||||||||||||||||||||||    
T  47207614 gagatgagagaaaatcaagacttccaaacactcttaaaacgtataagagacttcaccggtaac 47207552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 139
Target Start/End: Original strand, 37827358 - 37827447
Alignment:
Q  50 aagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcac 139  Q
    ||||| |||||| || ||||||||||   ||| ||| ||||||| |||||||||||||||||| ||  |||||| |||||||||||||||    
T  37827358 aagttgaaaatgtgaatttgcaaagtcgggattagatataagagttaaccatgacttacaaacgcatgtaaaacttataagagacttcac 37827447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 49048996 - 49049053
Alignment:
Q  83 agagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcacc 140  Q
    |||||||||||| |||||| |||||||||||||||| ||||||| ||||||| |||||    
T  49048996 agagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcacc 49049053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 185
Target Start/End: Original strand, 49041502 - 49041637
Alignment:
Q  50 aagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctc 149  Q
    ||||| |||||| || |||||||| |   |||||||||||||||| ||||| ||||| ||||| || || ||||  |||||||||||||| || || |||    
T  49041502 aagttaaaaatgagaatttgcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcatttgaaacaaataagagacttcactggcaatctc 49041601  T
Q  150 aacatgatttgtattatcaattcatgaggcagatac 185  Q
    |  |  ||| | || ||||||||||||| |||||||    
T  49041602 attagaattaggatgatcaattcatgagacagatac 49041637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 185
Target Start/End: Original strand, 50251172 - 50251307
Alignment:
Q  50 aagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctc 149  Q
    ||||| ||||||| | |||||| |||   |||||||||||||||| ||||| |||||| |||| ||||| ||  ||||||||| |||||| || |||||     
T  50251172 aagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacccactttaattgtataagagccttcactggcaaccta 50251271  T
Q  150 aacatgatttgtattatcaattcatgaggcagatac 185  Q
    |  |  |||||  | |||||||| ||||||||||||    
T  50251272 actaaaatttgagtgatcaattcgtgaggcagatac 50251307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 50672220 - 50672161
Alignment:
Q  64 attttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaac 123  Q
    |||||||||| || ||||||||||| ||||| | |||||||||| |||||||||| ||||    
T  50672220 attttgcaaaattgtgatcagagatgagagaaagccatgacttagaaacacacttgaaac 50672161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 54 - 174
Target Start/End: Complemental strand, 12200017 - 12199897
Alignment:
Q  54 tcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaaca 153  Q
    |||| |||||| |||||||||| | |||||||||||||||| |||||||||||||||||||| || |||| || ||||||||||||||| ||||||| ||    
T  12200017 tcaacatgcgaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagca 12199918  T
Q  154 tgatttgtattatcaattcat 174  Q
     |||||| || || |||||||    
T  12199917 ggatttgaatgattaattcat 12199897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 54 - 174
Target Start/End: Complemental strand, 12444445 - 12444325
Alignment:
Q  54 tcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaaca 153  Q
    |||| |||||| |||||||||| | |||||||||||||||| |||||||||||||||||||| || |||| || ||||||||||||||| ||||||| ||    
T  12444445 tcaacatgcgaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagca 12444346  T
Q  154 tgatttgtattatcaattcat 174  Q
     |||||| || || |||||||    
T  12444345 ggatttgaatgattaattcat 12444325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 56 - 180
Target Start/End: Original strand, 4032286 - 4032410
Alignment:
Q  56 aaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatg 155  Q
    ||||||||| |||||||||| | ||||||| ||||||| |||||| || |||||||||||||| |||||||||||||||||||  ||||  ||||  | |    
T  4032286 aaaatgcgaatttgcaaagtgaggatcagatataagagttaaccaagatttacaaacacacttgaaacgtataagagacttcattggtagtctcagtaag 4032385  T
Q  156 atttgtattatcaattcatgaggca 180  Q
    ||||| || ||||||||||||||||    
T  4032386 atttggatgatcaattcatgaggca 4032410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 23 - 149
Target Start/End: Complemental strand, 15348603 - 15348477
Alignment:
Q  23 aattctattagtgtgtgttgcagtgcaaagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaa 122  Q
    |||||||  |||||||||||| | |  || || |||||| || ||||| |||| | |||||||||||||||| ||||| ||||||||||| || || |||    
T  15348603 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 15348504  T
Q  123 cgtataagagacttcaccggtaacctc 149  Q
    |||||||||||||||||||||||||||    
T  15348503 cgtataagagacttcaccggtaacctc 15348477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 66 - 173
Target Start/End: Complemental strand, 12194999 - 12194892
Alignment:
Q  66 tttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtatta 165  Q
    ||||||||||   |||||||||||||||||||||||||||||||||  || || |||| || ||||||||||||||| ||||||| || |||||| || |    
T  12194999 tttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatga 12194900  T
Q  166 tcaattca 173  Q
    | ||||||    
T  12194899 ttaattca 12194892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 66 - 173
Target Start/End: Complemental strand, 12439427 - 12439320
Alignment:
Q  66 tttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtatta 165  Q
    ||||||||||   |||||||||||||||||||||||||||||||||  || || |||| || ||||||||||||||| ||||||| || |||||| || |    
T  12439427 tttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatga 12439328  T
Q  166 tcaattca 173  Q
    | ||||||    
T  12439327 ttaattca 12439320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 83 - 187
Target Start/End: Complemental strand, 21015457 - 21015353
Alignment:
Q  83 agagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcaga 182  Q
    |||||||||||| ||| || |||||||||||||||| ||||||| ||||||| | ||||||||||||||||  ||| | || |||||||| |||||||||    
T  21015457 agagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacctcaacaaaattaggatgatcaattcttgaggcaga 21015358  T
Q  183 tactg 187  Q
    |||||    
T  21015357 tactg 21015353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 185
Target Start/End: Original strand, 21979990 - 21980143
Alignment:
Q  32 agtgtgtgttgcagtgcaaagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataaga 131  Q
    |||||||||||| | |  ||| |||||||| || || ||||||||  ||| |||||| ||||| ||||| ||||||||||||||||| ||||||   |||    
T  21979990 agtgtgtgttgcggcggcaagatcaaaatgtgaattcgcaaagttgggatgagagatgagagaaaaccaagacttacaaacacacttgaaacgtgagaga 21980089  T
Q  132 gacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcagatac 185  Q
    ||||| || ||| |||| | || |||||  ||||||| ||||||||||||||||    
T  21980090 gactttactggttaccttagcaggatttcgattatcagttcatgaggcagatac 21980143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 11976 - 11878
Alignment:
Q  50 aagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacct 148  Q
    ||||| |||||| || |||||||||| || ||||||||||||||| |||||||||||||||||  | || ||||| ||||||||||| | |||||||||    
T  11976 aagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaatcggtaacct 11878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 29695898 - 29695768
Alignment:
Q  18 aacacaattctattagtgtgtgttgcagtgcaaagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacact 117  Q
    |||| ||||||||| |||||||| || |||  ||||| |||||| || |||||||||| | | | ||| ||||||||||||||| |||||||||| || |    
T  29695898 aacataattctattcgtgtgtgtagcggtggtaagttgaaaatgtgaatttgcaaagtgaggttgagatataagagataaccataacttacaaacgcatt 29695799  T
Q  118 taaaacgtataagagacttcaccggtaacct 148  Q
    | ||||| ||||||||||| || ||||||||    
T  29695798 tgaaacgaataagagacttgactggtaacct 29695768  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 29712866 - 29712929
Alignment:
Q  83 agagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaac 146  Q
    |||||||||||| |||||| |||||||||| ||||| ||||| |||||||||||||||||||||    
T  29712866 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 29712929  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 146
Target Start/End: Complemental strand, 29687765 - 29687669
Alignment:
Q  50 aagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaac 146  Q
    ||||| |||||| || |||||||||| | | | ||| || ||||| ||||| ||||||||||||||||| || ||||||||||||||||| ||||||    
T  29687765 aagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcactggtaac 29687669  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 178699 - 178638
Alignment:
Q  84 gagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaa 145  Q
    ||||| ||||||||||| |||||||||||||| || ||||| ||||||||||| || |||||    
T  178699 gagatgagagataaccaagacttacaaacacatttgaaacgaataagagacttaactggtaa 178638  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 153
Target Start/End: Complemental strand, 1812105 - 1812036
Alignment:
Q  84 gagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaaca 153  Q
    ||||||||||| |||||| |||||||||| || ||  ||||||| ||| ||||||| |||||||||||||    
T  1812105 gagataagagaaaaccataacttacaaacccatttggaacgtatgagatacttcactggtaacctcaaca 1812036  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 42562728 - 42562791
Alignment:
Q  83 agagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaac 146  Q
    |||||| ||||| ||||| ||||||||||| || || ||||| |||||||| ||||||||||||    
T  42562728 agagattagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtaac 42562791  T

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Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 24340112 - 24340030
Alignment:
Q  66 tttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacct 148  Q
    |||||||||| || |||||||||||| || |||||||||||||||||| | || ||||| ||||||||||| |||||||||||    
T  24340112 tttgcaaagtgattatcagagataagtgaaaaccatgacttacaaacagatttgaaacgaataagagacttaaccggtaacct 24340030  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 50 - 145
Target Start/End: Complemental strand, 24309891 - 24309796
Alignment:
Q  50 aagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaa 145  Q
    ||||| |||||| || |||||||||| |  ||||||||||||||| |||||| ||||||||||  | || ||||| ||||||||||| ||||||||    
T  24309891 aagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccggtaa 24309796  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 24415514 - 24415417
Alignment:
Q  87 ataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcagata 184  Q
    |||||||| ||||| ||||||| ||| || || ||||| ||||||||||| |||||||| ||||| | ||||||  | |||||||||| |||||||||    
T  24415514 ataagagaaaaccaagacttacgaacgcatttgaaacgaataagagacttaaccggtaatctcaataggatttgggtgatcaattcatcaggcagata 24415417  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 24322142 - 24322086
Alignment:
Q  84 gagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcacc 140  Q
    ||||||||||| ||||| ||||||||||| || || ||||| |||||||||||||||    
T  24322142 gagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagacttcacc 24322086  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 184
Target Start/End: Complemental strand, 24366853 - 24366735
Alignment:
Q  66 tttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtatta 165  Q
    |||||||||| | |||  ||||||||||| ||||||||||| |||||||| || ||||| || ||||  |  || |||||||||| || ||||||  | |    
T  24366853 tttgcaaagtaaggatttgagataagagaaaaccatgacttgcaaacacatttgaaacgaatcagagtttcaactggtaacctcagcaggatttgggtaa 24366754  T
Q  166 tcaattcatgaggcagata 184  Q
    ||||||||| ||| |||||    
T  24366753 tcaattcatcaggaagata 24366735  T

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