View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3327_low_1 (Length: 940)
Name: NF3327_low_1
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3327_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 565; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 185 - 916
Target Start/End: Complemental strand, 13140586 - 13139845
Alignment:
| Q |
185 |
aaaattcagttatctaaaatattgatagtgatcttgaacatgatcat------aagagacggttagagcgggtgctatgaaattgatgtggtggttgacg |
278 |
Q |
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| T |
13140586 |
aaaattcagttatctaaaatattgatagtgatcttgaacatgatcatgatcataagagacagttggagcgggtgctatgaaattgatgtggtggttgacg |
13140487 |
T |
|
| Q |
279 |
gtggttcttgactagtggagagtggtgctcgtacaaagatacttcaatttccaagctacttagacctcaatgtgttttgatgnnnnnnncaaaatgagaa |
378 |
Q |
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| T |
13140486 |
gtggttcttcactagtgcagagtggtgttcgtacaaagatacttcaatttccaagctactgagacctcaatgtgttttaatgtttttttcaaaatgagaa |
13140387 |
T |
|
| Q |
379 |
tatgtacttgattttacagttgtttgctctatttgtagatttttagatggacgataaatatgggcattttgacgaa----tttactcaaagtttgggaag |
474 |
Q |
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| T |
13140386 |
tatgtacttgatttgatagttgtttgctctatttgtagatttttagatggacgataaatatgggcattttgacgaaagcatttactcaaagttcgggaag |
13140287 |
T |
|
| Q |
475 |
gagataagcgaataatttgatttaaggcgggannnnnnnncatttgggagaaattttggcagctcatgcatggggtagcaaagatatgtgcttatgactc |
574 |
Q |
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| T |
13140286 |
gagataagcgaataatttgatttaaggagggattttttttcatttggtagaaattttggcagctcatgcatggtgtagcaaatagatgtgcttatgactc |
13140187 |
T |
|
| Q |
575 |
aaggcaattttcgaaagaaatcatgggaatgagtgttttggccatgactgtaattgtgatctgtttgccagaaccaaggggtctttctgtggaaaccttc |
674 |
Q |
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| T |
13140186 |
aaggcatttttcgaaagaaatcatgggaatgagtgttttggccatgattgtaattgtgatctgtttgccagaaccaaggggtctttctgtggaaaccttc |
13140087 |
T |
|
| Q |
675 |
acgaacaatcgttgttttttgatggtttttctgcttctcatcgctgctctttccacacctccggatatctgatgccaaatcgtcgcctgtttcctaattt |
774 |
Q |
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| T |
13140086 |
acgaacaatcgttgttttttgatggtttttccgcttctcaccgctgctctttccacacctccggatatctgatgccaaatcgtcgcatgtttccttattt |
13139987 |
T |
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| Q |
775 |
cttcgataattgagttgactatctttgtggcatcgattgtacaagttcgcgaaaaagctggacgactggaatgagggaaagcggctcaatagaaaaatgg |
874 |
Q |
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| T |
13139986 |
cttcgataattgagttgactatctttgtggcatcgattgtacaagttcgcgaaaaagctggacgactggaatgagggaaagcggctcaactgaaaaatgg |
13139887 |
T |
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| Q |
875 |
gggtattacttgcactcctcattatgattgcctctaaaggat |
916 |
Q |
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| T |
13139886 |
gggtattacttgcactcctcattatgattgcctctaaaggat |
13139845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 13140769 - 13140693
Alignment:
| Q |
1 |
ttgtaccccctcacttacttagtacaccttaccttacaactaaaggaatagtgaaaatctaattttatccttaatca |
77 |
Q |
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| T |
13140769 |
ttgtaccccctcacttacttagtacaccttaccttacaactaaaggtatggtgaaaatctaattttatccttaatca |
13140693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 763 - 821
Target Start/End: Original strand, 1426806 - 1426864
Alignment:
| Q |
763 |
gtttcctaatttcttcgataattgagttgactatctttgtggcatcgattgtacaagtt |
821 |
Q |
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| T |
1426806 |
gtttccttatttcttcgataattgagttgactatctttgtggcattgattgtacaagtt |
1426864 |
T |
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