View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3327_low_10 (Length: 464)
Name: NF3327_low_10
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3327_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 9 - 447
Target Start/End: Complemental strand, 39731721 - 39731283
Alignment:
| Q |
9 |
agcagagaaacatattctgaaaattggtaaagcaactcaaagattctagacaatacaactcaccatctgctgaagaagattttgcacctgaaaagagtaa |
108 |
Q |
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| T |
39731721 |
agcagggaaacatattctgaaaattggtaaagcaactcaaagattctagacaatacaactcaccatctgctgaagaagattttgcacctgaaaagagtaa |
39731622 |
T |
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| Q |
109 |
cagtggcatggacaaagtcagaaactgattgacatttacatcaatactaaaatcatcctgaaactaagtacatgaaagtttgcatattccactcagatct |
208 |
Q |
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| T |
39731621 |
cagttgcatggacaaagtcagaaactgattgacatttacatcaatactaaaatcatcctgaaactaagtacatgaaagtttgcatattccactcagatct |
39731522 |
T |
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| Q |
209 |
atgcagcatagacacttcaattagttcacctgattggaattgaacaccgaccggacaccgacacataattagatttgaaaatttaaattttcttagtatg |
308 |
Q |
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| T |
39731521 |
atgcagcatagacacttcaattagttcacctgattggaattgaacaccgaccggacaccgacacataattagatttgaaaatttaaattttcttagtatg |
39731422 |
T |
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| Q |
309 |
catatagttccacttttggaggagttctgtttgggtactcgtaaattgattttgccttcaaaattgattctaactagagctagagtttggagcttttaga |
408 |
Q |
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| T |
39731421 |
cgtatagttccacttttggaggagtcctgtttgggtactcgtaaattgattttgccttcaaaattgattctaactagagctagagtttggagcttttaga |
39731322 |
T |
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| Q |
409 |
ttcaataattgatttttagcctcacttttccactagtgt |
447 |
Q |
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| T |
39731321 |
ttctataattgatttttagcctcacttttccactagtgt |
39731283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 44246743 - 44246783
Alignment:
| Q |
65 |
aactcaccatctgctgaagaagattttgcacctgaaaagag |
105 |
Q |
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| T |
44246743 |
aactcaccatctgctgaagaagattttgcacctgaaaagag |
44246783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 405
Target Start/End: Original strand, 7667589 - 7667643
Alignment:
| Q |
352 |
aattgattttgccttcaaaattgattctaactag-agctagagtttggagctttt |
405 |
Q |
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| T |
7667589 |
aattgactttgccttcagaattgattctaacttgaagctagaatttggagctttt |
7667643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 383
Target Start/End: Complemental strand, 6544605 - 6544573
Alignment:
| Q |
351 |
aaattgattttgccttcaaaattgattctaact |
383 |
Q |
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| T |
6544605 |
aaattgattttgccttcagaattgattctaact |
6544573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 426
Target Start/End: Original strand, 8330094 - 8330169
Alignment:
| Q |
351 |
aaattgattttgccttcaaaattgattctaactaga-gctagagtttggagcttttagattcaataattgattttta |
426 |
Q |
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||||||||| ||||| || ||| |||||||||| || |||||| ||||||||||| ||||| |||||||||||||| |
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| T |
8330094 |
aaattgattctgcctccataatggattctaacttgaagctagaaattggagctttt-gattctataattgattttta |
8330169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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