View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3327_low_18 (Length: 374)
Name: NF3327_low_18
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3327_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 33647691 - 33647340
Alignment:
| Q |
13 |
aaatcgtcgtcctcgtcatcaacatcatctaccccttctagtatgccttgtagtatcctcttccttgaaccgtagagactattagaaaccgagacaacca |
112 |
Q |
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| T |
33647691 |
aaattgtcgtcctcgtcatcaacatcatctaccccttctagtatcccttgtagtatcctcttccttgaaccgtagagactattagaaaccgagacaacca |
33647592 |
T |
|
| Q |
113 |
agtcgctgcaccggttaccgtttgcatcagcggaactaacatctgcagatacatcaagcaaaagcttgacaacctcggcagaagcagcagaacaaccaga |
212 |
Q |
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||| |||||||||||||| | |||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
33647591 |
agttgctgcaccggttacgatatgcatcagcggaactaacatctgcagatgcatcaagcagaagtttgacaacctcggcagaagcagcagaacaaccaga |
33647492 |
T |
|
| Q |
213 |
aacagcacaatgaagagcggtagccctatctgagccatacactcggttaacatcaacacgaccggttccgagaatataagacaacacacccttgcttcca |
312 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33647491 |
aacagcacaacgaagagcggtagccctatctgagccacacactcggttaacatcaacacgaccggttccgagaatataagacaacacacccttgcttcca |
33647392 |
T |
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| Q |
313 |
tataaagcacctaccataagaggtgtcctctcttcatatcccatttcctttg |
364 |
Q |
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| T |
33647391 |
tataaagcagctaccataagaggtgtcctctcttcatatcccatttcctttg |
33647340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 30 - 362
Target Start/End: Complemental strand, 25812492 - 25812161
Alignment:
| Q |
30 |
atcaacatcatctaccccttctagtatgccttgtagtatcctcttccttgaaccgtagagactattagaaaccgagacaaccaagtcgctgcaccggtta |
129 |
Q |
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| T |
25812492 |
atcaacatcatctacgccttctagtatggatcgtagtatcctcttccttgaaccgaatatactactagacaccgagacaatcaagtcgctgcactg-tta |
25812394 |
T |
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| Q |
130 |
ccgtttgcatcagcggaactaacatctgcagatacatcaagcaaaagcttgacaacctcggcagaagcagcagaacaaccagaaacagcacaatgaagag |
229 |
Q |
| |
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| || ||||| ||||||||||||||||||| |||||||| |||| |||| ||| || ||||||||||||||||| ||||||||||||||| |||||| |
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| T |
25812393 |
tcattcacatcaatggaactaacatctgcagatgcatcaagcgaaaggttgataacttcagcagaagcagcagaacatccagaaacagcacaacgaagag |
25812294 |
T |
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| Q |
230 |
cggtagccctatctgagccatacactcggttaacatcaacacgaccggttccgagaatataagacaacacacccttgcttccatataaagcacctaccat |
329 |
Q |
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||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||| | ||||| |
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| T |
25812293 |
cggtagccctatctgagccgcacactcggttgacatcaacacgactggttccgagaatataagacaacacacccttgcttccaaataaggcagcaaccat |
25812194 |
T |
|
| Q |
330 |
aagaggtgtcctctcttcatatcccatttcctt |
362 |
Q |
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||||| |||||||||||||||||||| ||||| |
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| T |
25812193 |
aagagccgtcctctcttcatatcccatatcctt |
25812161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 79 - 364
Target Start/End: Complemental strand, 25818117 - 25817832
Alignment:
| Q |
79 |
gaaccgtagagactattagaaaccgagacaaccaagtcgctgcaccggttaccgtttgcatcagcggaactaacatctgcagatacatcaagcaaaagct |
178 |
Q |
| |
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|||||| ||| ||||||||| |||||||||| ||||||| | |||| ||| | || ||||| | |||| |||||||||| |||||| |||||||| |
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| T |
25818117 |
gaaccggagatactattagacaccgagacaatcaagtcgttacaccagttgtcattctcatcaacaacactaccatctgcagaagcatcaaccaaaagct |
25818018 |
T |
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| Q |
179 |
tgacaacctcggcagaagcagcagaacaaccagaaacagcacaatgaagagcggtagccctatctgagccatacactcggttaacatcaacacgaccggt |
278 |
Q |
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| | || |||||||||||||||||||||||||| ||||| | |||||||||| ||| |||| ||||| ||| | |||| |||||| ||||||||||| |
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| T |
25818017 |
taataatctcggcagaagcagcagaacaaccagtaacagaaaaatgaagagctgtacccctgtctgaaccacaaggtcggctaacattgacacgaccggt |
25817918 |
T |
|
| Q |
279 |
tccgagaatataagacaacacacccttgcttccatataaagcacctaccataagaggtgtcctctcttcatatcccatttcctttg |
364 |
Q |
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||| |||||||||||||||||||||||||||||| | || ||| | | ||||||||| ||||| |||||||| | ||||||||||| |
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| T |
25817917 |
tccaagaatataagacaacacacccttgcttccaaacaaggcagcaatcataagaggggtcctttcttcataactcatttcctttg |
25817832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 128 - 350
Target Start/End: Complemental strand, 30122007 - 30121785
Alignment:
| Q |
128 |
taccgtttgcatcagcggaactaacatctgcagatacatcaagcaaaagcttgacaacctcggcagaagcagcagaacaaccagaaacagcacaatgaag |
227 |
Q |
| |
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||||||| |||||| | | |||| |||| || ||| |||||||||||| ||||| || || || ||||||||||||| ||| ||| ||||||||||| |
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| T |
30122007 |
taccgttggcatcaacagcactagcatccgccgatgcatcaagcaaaatcttgataatcttgggggaagcagcagaacccccaacaaccgcacaatgaag |
30121908 |
T |
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| Q |
228 |
agcggtagccctatctgagcca-tacactcggttaacatcaacacgaccggttccgagaatataagacaacacacccttgcttccatataaagcacctac |
326 |
Q |
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||| ||||| | ||| || ||| || || || ||||||||||| ||||| ||||| |||||||||| | | ||| || |||||||| | |||| | || |
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| T |
30121907 |
agcagtagcaccatcggatccactagac-cgattaacatcaacccgacctgttccaagaatataagccgatacatccaaacttccatacatagcagcaac |
30121809 |
T |
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| Q |
327 |
cataagaggtgtcctctcttcata |
350 |
Q |
| |
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||| |||||||||||||||||||| |
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| T |
30121808 |
catgagaggtgtcctctcttcata |
30121785 |
T |
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