View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3327_low_25 (Length: 335)

Name: NF3327_low_25
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3327_low_25
NF3327_low_25
[»] chr3 (2 HSPs)
chr3 (129-254)||(38510546-38510671)
chr3 (265-324)||(38510440-38510499)
[»] chr2 (4 HSPs)
chr2 (129-254)||(22144974-22145099)
chr2 (265-324)||(27561155-27561214)
chr2 (265-324)||(37457596-37457655)
chr2 (265-322)||(22144871-22144927)
[»] chr4 (2 HSPs)
chr4 (9-113)||(5181586-5181676)
chr4 (265-324)||(5742686-5742745)
[»] chr8 (2 HSPs)
chr8 (130-193)||(38681796-38681859)
chr8 (130-193)||(38683049-38683112)


Alignment Details
Target: chr3 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 129 - 254
Target Start/End: Complemental strand, 38510671 - 38510546
Alignment:
Q  129 ctggtttttgtgttgtgttgtgccactgaattttacttttgcaggttttgggagaagcagagaaaaaaggcttctaacgtaatatcagataccaacaccc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38510671 ctggtttttgtgttgtgttgtgccactgaattttacttttgcaggttttgggagaagcagagaaaaaaggcttctaacgtaatatcagataccaacaccc 38510572  T
Q  229 tttttcagtattagttttgctttgat 254  Q
    ||||||||||||||||||||||||||    
T  38510571 tttttcagtattagttttgctttgat 38510546  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 265 - 324
Target Start/End: Complemental strand, 38510499 - 38510440
Alignment:
Q  265 ggattcatagatatgtgaatagagattagttttgctctatatttggaactaaaacttcat 324  Q
    |||||||||||||||||||||| ||||| |||||||  ||||||||||||||||||||||    
T  38510499 ggattcatagatatgtgaatagggattaattttgctacatatttggaactaaaacttcat 38510440  T

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Target: chr2 (Bit Score: 114; Significance: 9e-58; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 129 - 254
Target Start/End: Complemental strand, 22145099 - 22144974
Alignment:
Q  129 ctggtttttgtgttgtgttgtgccactgaattttacttttgcaggttttgggagaagcagagaaaaaaggcttctaacgtaatatcagataccaacaccc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22145099 ctggtttttgtgttgtgttgtgccactgaattttacttttgcaggttttaggagaagcagagaaaaaaggcttctaacgtaatatcagataccaacaccc 22145000  T
Q  229 tttttcagtattagttttgctttgat 254  Q
     |||||||||||||||||| ||||||    
T  22144999 gttttcagtattagttttgttttgat 22144974  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 265 - 324
Target Start/End: Original strand, 27561155 - 27561214
Alignment:
Q  265 ggattcatagatatgtgaatagagattagttttgctctatatttggaactaaaacttcat 324  Q
    |||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||    
T  27561155 ggattcatagatatgtgaatagggattaattttgctatatatttggaactaaaacttcat 27561214  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 265 - 324
Target Start/End: Original strand, 37457596 - 37457655
Alignment:
Q  265 ggattcatagatatgtgaatagagattagttttgctctatatttggaactaaaacttcat 324  Q
    |||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||    
T  37457596 ggattcatagatatgtgaatagggattaattttgctatatatttggaactaaaacttcat 37457655  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 265 - 322
Target Start/End: Complemental strand, 22144927 - 22144871
Alignment:
Q  265 ggattcatagatatgtgaatagagattagttttgctctatatttggaactaaaacttc 322  Q
    |||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||    
T  22144927 ggattcatagatatgtgaatag-gattaattttgctatatatttggaactaaaacttc 22144871  T

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Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 5181676 - 5181586
Alignment:
Q  9 attgctcatattggttaccaaccaaattatgcattaggatcttaatgaatgcaagagatgtcctatatttgagaatgaagtggtgcatatgacaaaacaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||              |||||||| ||||||||||||||||||||||||||||    
T  5181676 attgctcatattggttaccaaccaaattatgcattaggatcttaatgaa--------------tatatttgggaatgaagtggtgcatatgacaaaacaa 5181591  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 265 - 324
Target Start/End: Complemental strand, 5742745 - 5742686
Alignment:
Q  265 ggattcatagatatgtgaatagagattagttttgctctatatttggaactaaaacttcat 324  Q
    |||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||    
T  5742745 ggattcatagatatgtgaatagggattaattttgctatatatttggaactaaaacttcat 5742686  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 38681796 - 38681859
Alignment:
Q  130 tggtttttgtgttgtgttgtgccactgaattttacttttgcaggttttgggagaagcagagaaa 193  Q
    ||||| ||||||||||||  |||| ||||||||| |||||||||| | ||||||| ||||||||    
T  38681796 tggttgttgtgttgtgtttcgccattgaattttaattttgcaggtgtagggagaaccagagaaa 38681859  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 38683049 - 38683112
Alignment:
Q  130 tggtttttgtgttgtgttgtgccactgaattttacttttgcaggttttgggagaagcagagaaa 193  Q
    ||||| ||||||||||||  |||| ||||||||| |||||||||| | ||||||| ||||||||    
T  38683049 tggttgttgtgttgtgtttcgccattgaattttaattttgcaggtgtagggagaaccagagaaa 38683112  T

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