View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3327_low_27 (Length: 316)
Name: NF3327_low_27
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3327_low_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 1754030 - 1753934
Alignment:
| Q |
10 |
gcacagatattgtaacatgtttatttgcaaaagtataaaacaaagtgacagatatttcacaacaaacgaaaaacaattttgttatcaaagaatttga |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1754030 |
gcacagatattgtaacatgtttatttgcaaaagtataaaacaaagtgacagatatttcacaacaaacgaaaaacaattttgttatcaaagaatttga |
1753934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 1753847 - 1753787
Alignment:
| Q |
103 |
ttgaagaaaccatgtctttgctatctaaattcttatccaataattatgtctaaactgaaca |
163 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1753847 |
ttgaagaaaccatgtttttgctatctaaattcttatccaataattatgtctaaactgaaca |
1753787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 1753763 - 1753710
Alignment:
| Q |
172 |
gacttgtgaagttgtaaatatatgacacttttgatgagaaatgtagaaatatta |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1753763 |
gacttgtgaagttgtaaatatatgacacttttcatgagaaatgtagaaatatta |
1753710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 292
Target Start/End: Complemental strand, 1753551 - 1753513
Alignment:
| Q |
254 |
atataagaaatctgtaacaaattcacacatgctcgtaca |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1753551 |
atataagaaatctgtaacaaattcacacatgctcgtaca |
1753513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 27504164 - 27504217
Alignment:
| Q |
172 |
gacttgtgaagttgtaaatatatgacacttttgatgagaaatgtagaaatatta |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
27504164 |
gacttgtgaagttgtaaatatatgacacttttcatgagaaatggagaaatatta |
27504217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 27478768 - 27478715
Alignment:
| Q |
172 |
gacttgtgaagttgtaaatatatgacacttttgatgagaaatgtagaaatatta |
225 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||||||| |||||||||| |
|
|
| T |
27478768 |
gacttgtgaagttgtaaatttatgacacttttcatgagaaatggagaaatatta |
27478715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 27509106 - 27509150
Alignment:
| Q |
181 |
agttgtaaatatatgacacttttgatgagaaatgtagaaatatta |
225 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
27509106 |
agttgtaaatatatgacacttttcatgagaaatggagaaatatta |
27509150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 27475464 - 27475422
Alignment:
| Q |
172 |
gacttgtgaagttgtaaatatatgacacttttgatgagaaatg |
214 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
27475464 |
gacttgtgaagttgtaaatatatgactcttttcatgagaaatg |
27475422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 27522947 - 27522986
Alignment:
| Q |
107 |
agaaaccatgtctttgctatctaaattcttatccaataatt |
147 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
27522947 |
agaaaccatgtttttgctatctaaattc-tatccaataatt |
27522986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University