View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3327_low_3 (Length: 684)
Name: NF3327_low_3
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3327_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 10 - 400
Target Start/End: Original strand, 25008178 - 25008570
Alignment:
| Q |
10 |
aagaatatgatagggtaagatcttaaatagcaaaatgctcacaagcttgctaataaaacactgcatcatttttatgtcaaaccaaaacatgcattatttt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25008178 |
aagaatatgatagggtaagatcttaaatagcaaaatgctcacaagcttgctaataaaacactgcatcatttttatgtcaaaccaaaacatgcactatttt |
25008277 |
T |
|
| Q |
110 |
taccttatgaaa--ttaaatgtgttataaacatgataggataagatgtaaatagcaaaatgcttgcttactcagaaatagaagcagtaaagtttccagag |
207 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25008278 |
taccttatgaaaaattaaatgtgttataaatatgataggataagatgtaaatagcaaaatgcttgcttactcagaaatagaagcagtaaagtttccagag |
25008377 |
T |
|
| Q |
208 |
atagcataaggatctttaaaataagcagctttattctcttgttttgcaaccttagcactttcttgccaatatgaatcaaactcaggtctttgttctttcc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
25008378 |
atagcataaggatctttaaaataagcagctttattctcttgttttgcaaccttagccctttcttgccaatatgaatcaaactcaggtctttgttctgtcc |
25008477 |
T |
|
| Q |
308 |
aatactcattattctctaatttattggcattcaatttaggggtgagaattgctaaacaaagcacaaaaagaataatgtcaagtgatcttgcca |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25008478 |
aatactcattattctctaatttattggcattcaatgtaggggtgagaattgccaaacaaagcacaaaaagaataatgtcaagtgatcttgcca |
25008570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 442 - 669
Target Start/End: Original strand, 25008616 - 25008843
Alignment:
| Q |
442 |
ggggtttggacttcaaatcatatgaagttataaccccaaggccaacaaaatgaaaagaaagaacacttgttgttagggaaactttatgattaatgatatc |
541 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25008616 |
ggggtttggacttcaaatcatatgaagttataaccccaaggccaacaaaatgaaaagaaagaacacttgttgttagggaaactttatgattaatgatatc |
25008715 |
T |
|
| Q |
542 |
tggtccctgattatgttttcattgttgcataggtatttatataccaaaattgaaatccaattatggactatgatgaagaaacattaggctagataaacgg |
641 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25008716 |
tggtccctgattatgttttcattgttgcataggtatttatataccaaaattgaaatccaattatggactatgatgaagaaacattaggctagataaacgg |
25008815 |
T |
|
| Q |
642 |
gttacttatctttgaccatgaacatttt |
669 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
25008816 |
gttacttatctttgaccatgaacatttt |
25008843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University