View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3327_low_33 (Length: 283)
Name: NF3327_low_33
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3327_low_33 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 7 - 283
Target Start/End: Original strand, 26378550 - 26378827
Alignment:
| Q |
7 |
ttgatggtaatctattttctttacagaaacaaatgaaggagatagatgatgtgaagagtaaacttagaacagacagcataatttttgaagcctcgtagct |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26378550 |
ttgatggtaatctattttctttacagaaacaaatgaaggagatagatgatgtgaagagtaaacttagaacagacagcataatttttgaagcctcgtagct |
26378649 |
T |
|
| Q |
107 |
aactcattcttgatgaaagatgactatgaatttaatatatatac-tctctccaattgcaatctaacagaatgctgtgaattttggcggagaaacatgatt |
205 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26378650 |
aactcattcttgatgaaagataactatgaatttacaatatatacttctctccaattgcaatctaacagaatgctgtgaattttggcggagaaacatgatt |
26378749 |
T |
|
| Q |
206 |
tagttgtggttccgtagatacaacgaaatcactcgtgtttcagctgtttgtccattttgttcaatgttagttcatttc |
283 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26378750 |
tagttgtggttccgtagatacaacgaaaccactcgtgtttcagctgtttgtccattttgttcaatgttagttcatttc |
26378827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University