View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3327_low_35 (Length: 278)
Name: NF3327_low_35
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3327_low_35 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 98 - 260
Target Start/End: Complemental strand, 31565883 - 31565719
Alignment:
| Q |
98 |
taaggggttgaggaaaagtaagggcactttcgtcatttcattcccaaagatgaagaaaaggtgccaataattgtgttattttttatacccataaattgaa |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31565883 |
taaggggttgaggaaaagtaagggcactttcgtcatttcattcccaaagatgaagaaaaggtgccaataattgtgttattttttatatccataaattgaa |
31565784 |
T |
|
| Q |
198 |
acattctaccatattcatta--acactcataattggcaccttctgtaagctctttatgaatatga |
260 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31565783 |
acattctaccatattcattaacacactcataattggcaccttttgtaagctctttatgaatatga |
31565719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 31566012 - 31565922
Alignment:
| Q |
11 |
cagagacctcagaaagaaacagcttcagttgttgttggaatttatgatggttatgggttttgaggttgaagagcaaaagaaagttgataag |
101 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31566012 |
cagaaacctcagaaagaaacagcttcagttgttgttggaatttatgatggttatgggttttgaggttgaagagcaaaagaaagttgataag |
31565922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University