View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3327_low_39 (Length: 258)
Name: NF3327_low_39
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3327_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 41310566 - 41310317
Alignment:
| Q |
1 |
cacagtaactgaatttttagctaaaagataacacaacaacttgttctttaacactgatttttgcagcatctacaaataatcaacaatattatcaatagat |
100 |
Q |
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| T |
41310566 |
cacagtaactgaatttttagctaaaagataacacaacaacttgttctttaacactgatttttgcagcatctacaaataatcaacaatattatgaatagat |
41310467 |
T |
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| Q |
101 |
tctaatcttgactgggtttgaggaaaagattgacttagaacctggatcgattcacggtttaagttgctccggtgctgtcctgtgttaggtgctgcggtgt |
200 |
Q |
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| T |
41310466 |
tctaatcttgactgggtttgaggaaaagattgacttagaacctggatcgattcacggtttaagttgctccggtgctgtcctgtgttgggtgctgcggtgt |
41310367 |
T |
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| Q |
201 |
actgcagnnnnnnngctgccggtattctgtcagtttttctgttctctgct |
250 |
Q |
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| T |
41310366 |
actgcagtttctttgctgccggtattctgtcagttttgctgttctctgct |
41310317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 14 - 152
Target Start/End: Original strand, 9562043 - 9562186
Alignment:
| Q |
14 |
tttttagctaaaagataacacaacaacttgttctttaacactgatttttgcagcatctacaaataatcaacaatattat-ca-atagattctaatcttga |
111 |
Q |
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||||||||| ||||||||| ||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||| || ||| |||||||| |||| |
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| T |
9562043 |
tttttagctgaaagataacgcaataacttgttctttgacactgatttctgcagcatctacaaataatcaacaatattatgcatatatattctaattttga |
9562142 |
T |
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| Q |
112 |
ctgggtttgaggaaaag---attgacttagaacctggatcgatt |
152 |
Q |
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| T |
9562143 |
cttggtttgaggaaaagattattgacttagaacctggatcgatt |
9562186 |
T |
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