View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3327_low_4 (Length: 616)
Name: NF3327_low_4
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3327_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 20 - 289
Target Start/End: Complemental strand, 34944392 - 34944123
Alignment:
| Q |
20 |
tcttacttctttagagtaaatgtatgttggtggttcctctctggtgggtccttcctgtaaaaacaacacactgaaaaagatagagccagaaaacacaaag |
119 |
Q |
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| T |
34944392 |
tcttacttctttagagtaaatgtatgttggtggttcctctctggtgggtcctttctgcaaaaacaacacactgaaaaagatagagccagaaaacacaaag |
34944293 |
T |
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| Q |
120 |
tgtaatgttgttcatttctgcttgattttcgagtctattgagttgcttcgattatgtgttgaacatgtaatcaggattgaaattatgaaaatgcatagca |
219 |
Q |
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| T |
34944292 |
tgtaatgttgttcatttctacttgtttttcgagtctattgagttgcttccattatgtgttgaacatgtaatcaggattgaaattatgaaaatgcatagca |
34944193 |
T |
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| Q |
220 |
cgtccaagttcaacagcattgtcatctttgatacacatttttataatgaaagtaaatcaagaaattgatg |
289 |
Q |
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| T |
34944192 |
cgtccaagttcaacagcattgtcatctttgatacacatttttataatgaaagtaaatcaagaaattgatg |
34944123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 349 - 605
Target Start/End: Complemental strand, 34944063 - 34943807
Alignment:
| Q |
349 |
atagattcgaagatgttcgattcaattttccttttcctatcttagaactagcattactcaactctcgaactcatactcaatacacttgtctaaataaaat |
448 |
Q |
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| T |
34944063 |
atagatttgaagatgttcgattcaattttccttttcctatcttagaactagcattactcaactctcgaactcatactcaatacacttgtctaaataaaat |
34943964 |
T |
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| Q |
449 |
ttctannnnnnngttcattgcctatgatatttttggtcttttaaaggtcagagctcagagtttaaactgaagacaaatgcacgtctgagtcaataaactt |
548 |
Q |
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| T |
34943963 |
ttctatttttttgttcattgcctatgatatttttggtcttttaaaggtcagagctcagagtttaaactgaagacaaatgcacgtctgagtcaataaactt |
34943864 |
T |
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| Q |
549 |
catatcgactttaacttaaccaccattaactttaatattggatgccatttacttcat |
605 |
Q |
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| T |
34943863 |
catatcgactttaacttaaccaccattaactttaatattggatgccatttacttcat |
34943807 |
T |
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