View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3327_low_40 (Length: 255)
Name: NF3327_low_40
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3327_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 64 - 201
Target Start/End: Complemental strand, 2162762 - 2162625
Alignment:
| Q |
64 |
taattcaaatatgtatatgtatctcatgaatatttatacacatcattatatcgatgctcaagtgattgatgtagaacaaccaactaattcctctaatcca |
163 |
Q |
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| T |
2162762 |
taattcaaatatgtatatgtatctcatgaatatttatacacatcattatagcgatgctcaagtgattgatgtagaacaacctactaattcctctaatcca |
2162663 |
T |
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| Q |
164 |
agtaaccaaacaaggtactcaatccttttaattacctt |
201 |
Q |
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| T |
2162662 |
aataaccaaacaaggtactcaatccttttcattacctt |
2162625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 64 - 192
Target Start/End: Complemental strand, 2164751 - 2164620
Alignment:
| Q |
64 |
taattcaaatatgtatatgtatctcatgaatatttatacacatcattat---atcgatgctcaagtgattgatgtagaacaaccaactaattcctctaat |
160 |
Q |
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||||| |||||||||||||||||||||||| |||||||||||| ||||| | ||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
2164751 |
taattgaaatatgtatatgtatctcatgaaaatttatacacattattattacagcgatgctcaagggattacggtagaacaaccaactaattcctctaat |
2164652 |
T |
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| Q |
161 |
ccaagtaaccaaacaaggtactcaatcctttt |
192 |
Q |
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|||| ||||||||||||||||||||||||||| |
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| T |
2164651 |
ccaaataaccaaacaaggtactcaatcctttt |
2164620 |
T |
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