View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3327_low_46 (Length: 250)
Name: NF3327_low_46
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3327_low_46 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 43870060 - 43870294
Alignment:
| Q |
10 |
aagaatatctagtgttagaattcctattgggcagtaccttttctgtttagaccctacttacaggtgcaaacaattcaattaaactgtcgcactcacacaa |
109 |
Q |
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| T |
43870060 |
aagaatatctagtgttagaattcctattgggcagtaccttttctgtttagaccctacttacaggtgcaaacaattcaattaaactgtcgcactcacacaa |
43870159 |
T |
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| Q |
110 |
ctattatgggctatgtctaacgttcacaatttagtggattccnnnnnnnnnctttctaggaattaatggaagtcaagaaaatagaattaatcttgtcaat |
209 |
Q |
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| T |
43870160 |
ctattatgggctatgtctaacgttcacaatttagtggattcctttt------tttccaggaattaatggaagtcaagaaaatagaattaatcttgtcaat |
43870253 |
T |
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| Q |
210 |
ctagcaaacaaatattaagttggtcagagtgaaactcaact |
250 |
Q |
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| T |
43870254 |
ctagctaacaaatattaagttggtcagagtgaaactcaact |
43870294 |
T |
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