View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3327_low_51 (Length: 244)
Name: NF3327_low_51
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3327_low_51 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 873196 - 872971
Alignment:
| Q |
1 |
aataaataaggtaatgagaaaacaaaattcatcactttataagaaattttagtcatgaaaatagttcatacataagcacttaagcaatgggctaaaaatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
873196 |
aataaataaggtaatgagaaaacaaaattcatcacttcataagaaattttagtcatgaaaatagttcatacataagcacttaagcaatgagctaaaaatt |
873097 |
T |
|
| Q |
101 |
aagtcgttaattcaaatgggttttaagttttgatgcaaattgcttctttcaattaatagcagcatgcttgacatcatcgtcattggaagggnnnnnnnct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
873096 |
aagtcgttaattcaaatgggttttaagttttgatgcaaattgcttctttcaattaatagcagcatgcttgacatcatcgtcattggaagggaaaaaaact |
872997 |
T |
|
| Q |
201 |
acccaaaggatttgagcattacactt |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
872996 |
acccaaaggatttgagcattacactt |
872971 |
T |
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