View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3327_low_52 (Length: 242)
Name: NF3327_low_52
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3327_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 39557281 - 39557168
Alignment:
| Q |
18 |
aggaacatatggaggtagtattgtaaaagtaatgtgaggtcttgcttgtactataagtggtaaattgttcatttggagtgtatatgtagggagtaatttg |
117 |
Q |
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| T |
39557281 |
aggaacatatggaggtagtattgtaaaagtaatgtgaggtcttgcttgtactataagtggtaaattgttcatttggagtgtatatgtagggagtaatctg |
39557182 |
T |
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| Q |
118 |
tctaatgtgggtcg |
131 |
Q |
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| T |
39557181 |
tctaatgtgggtcg |
39557168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 39557130 - 39557024
Alignment:
| Q |
138 |
atagttgggttgtatttaattaagttgggagtaatccctgtattctatttttt--agtgtatattttgctattaagaaaaggtaacgagccaataacatg |
235 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39557130 |
atagttgggttgtatttaattaagttgggagtaatccctgtattctattttttttagtgtatattttgctattaagaaaaggtaacgagccaataacatg |
39557031 |
T |
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| Q |
236 |
ttgtaat |
242 |
Q |
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| T |
39557030 |
ttgtaat |
39557024 |
T |
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