View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3327_low_56 (Length: 239)
Name: NF3327_low_56
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3327_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 54179991 - 54179783
Alignment:
| Q |
13 |
gagatgaaggtaatgatcaatgagacattgcttaatttttcaaaaagggaagtgtttgctatgagaaatgaggttataagtctaattccaagaattgttt |
112 |
Q |
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| T |
54179991 |
gagaagaaggtaatgatcaatgagacattgcttaatttttcaaaaagggaagtgtttgctatgagaaatgaggttataagtctaattccaagaattgtgt |
54179892 |
T |
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| Q |
113 |
atcgttatccaagttctagattagaaacacttgaagatgcgtttgatgtagctgttaagggaatccttggaagaattgaagcaatgagaagagattacaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54179891 |
atcgttatccaagttctagattagaaacacttgaagatgcgtttgatgtagctgttaagggaatccttggaagaattgaagcaatgagaagagattacaa |
54179792 |
T |
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| Q |
213 |
atggtaact |
221 |
Q |
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||||||||| |
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| T |
54179791 |
atggtaact |
54179783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 25 - 204
Target Start/End: Original strand, 41948673 - 41948852
Alignment:
| Q |
25 |
atgatcaatgagacattgcttaatttttcaaaaagggaagtgtttgctatgagaaatgaggttataagtctaattccaagaattgtttatcgttatccaa |
124 |
Q |
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| T |
41948673 |
atgattaatgagacattgttcaatgtttcaaaaagtgaagtgttggcaatgagagaagaggttataagactcattccgaggattgtgtatcgttatccag |
41948772 |
T |
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| Q |
125 |
gttctagattagaaacacttgaagatgcgtttgatgtagctgttaagggaatccttggaagaattgaagcaatgagaaga |
204 |
Q |
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| T |
41948773 |
gttctagattagagacaattgaagatgcttttgatatagctgttaagggagttcttggaagaattgaagcaatgagaaga |
41948852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 25 - 204
Target Start/End: Original strand, 41943159 - 41943338
Alignment:
| Q |
25 |
atgatcaatgagacattgcttaatttttcaaaaagggaagtgtttgctatgagaaatgaggttataagtctaattccaagaattgtttatcgttatccaa |
124 |
Q |
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||||| |||||||||||| | ||| |||||||||| |||||||| || |||||| | || |||||||| || ||||| || ||||| |||||||||||| |
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| T |
41943159 |
atgattaatgagacattgttcaatgtttcaaaaagtgaagtgttggcaatgagagaagaagttataagactcattccgaggattgtgtatcgttatccag |
41943258 |
T |
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| Q |
125 |
gttctagattagaaacacttgaagatgcgtttgatgtagctgttaagggaatccttggaagaattgaagcaatgagaaga |
204 |
Q |
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| T |
41943259 |
gttctagattagagacaattgaagatgcttttgatatagctgttaagggagttcttggaagaattgaagcaatgagaaga |
41943338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 199
Target Start/End: Original strand, 22795164 - 22795338
Alignment:
| Q |
25 |
atgatcaatgagacattgcttaatttttcaaaaagggaagtgtttgctatgagaaatgaggttataagtctaattccaagaattgtttatcgttatccaa |
124 |
Q |
| |
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|||||||||||||||||| ||||| | | |||| |||||||| | |||||| ||||||| ||||| ||||||| | ||||| || |||||||||| |
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| T |
22795164 |
atgatcaatgagacattgtttaatgtacaagaaagcgaagtgttggaaatgagagatgaggtcataagattaattccgaagattgtataccgttatccaa |
22795263 |
T |
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| Q |
125 |
gttctagattagaaacacttgaagatgcgtttgatgtagctgttaagggaatccttggaagaattgaagcaatga |
199 |
Q |
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||||||| || || |||||||| ||||| ||||||||||||||||||||| | ||| ||||||||||| ||||| |
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| T |
22795264 |
gttctaggttggagacacttgatgatgcatttgatgtagctgttaagggagttcttcaaagaattgaagaaatga |
22795338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 25 - 204
Target Start/End: Original strand, 1211426 - 1211605
Alignment:
| Q |
25 |
atgatcaatgagacattgcttaatttttcaaaaagggaagtgtttgctatgagaaatgaggttataagtctaattccaagaattgtttatcgttatccaa |
124 |
Q |
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| T |
1211426 |
atgattaatgagacatttttcaatgtttcaaaaagtgaagtgttggcaatgagagaagaggttataagactcattccgaggattgtgtatcgttatccag |
1211525 |
T |
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| Q |
125 |
gttctagattagaaacacttgaagatgcgtttgatgtagctgttaagggaatccttggaagaattgaagcaatgagaaga |
204 |
Q |
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| T |
1211526 |
gatctagattagagacaattgaagatgcttttgatatagctgttaagggagttcttggaagaattgaagcaatgagaaga |
1211605 |
T |
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