View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3327_low_61 (Length: 236)
Name: NF3327_low_61
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3327_low_61 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 36373746 - 36373524
Alignment:
| Q |
1 |
tattttcataagtttctgtcacgttcaaattcaaattgccactaaaaaa--caagaaactatcaagaattcaatgatccacgtaatatattgaaaattca |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36373746 |
tattttcataagtttctgtcacgttcaaattcaaattgccactaaaaaaaacaagaaactatcaagaattcaatgatccacgtaatatattgaaaattca |
36373647 |
T |
|
| Q |
99 |
acaagaattttacgatcatagtataaattgaacgtgacatgagattaggcaaaattgtaacatttgtaacacattagagaaattaggctatacttgataa |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36373646 |
acaagaattttacgatcatagtataaattgaacgtgacatgagattaggcaaaattgtaacatttgtaacacattagagaaattaggctatacttgataa |
36373547 |
T |
|
| Q |
199 |
caaaatttgaatcgtgtacaaag |
221 |
Q |
| |
|
|| ||||||||||||| |||||| |
|
|
| T |
36373546 |
cagaatttgaatcgtgaacaaag |
36373524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University