View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3327_low_64 (Length: 220)

Name: NF3327_low_64
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3327_low_64
NF3327_low_64
[»] chr6 (2 HSPs)
chr6 (13-202)||(14588554-14588743)
chr6 (33-202)||(14622232-14622401)
[»] chr2 (2 HSPs)
chr2 (85-140)||(1361556-1361611)
chr2 (78-127)||(20492331-20492380)
[»] chr3 (1 HSPs)
chr3 (39-120)||(11530122-11530203)


Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 14588554 - 14588743
Alignment:
Q  13 agcataggtgcagctcgaaccttggttttctttaatccaccaggggaacgaaccgacatagacttgtatagtccaccaaaatgggttcctttccaaacaa 112  Q
    |||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14588554 agcataggcgcagctcggaacttggttttctttaatccaccaggggaacgaaccgacatagacttgtatagtccaccaaaatgggttcctttccaaacaa 14588653  T
Q  113 ccattcatctcaaacgttacgaggttatgagaatacagtcggctgtgaagaatgattctggaagaaaatttagtcgttctgatgccgaca 202  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14588654 ccattcatctcaaacgttacgaggttatgagaatacagtcagctgtgaagaatgattatggaagaaaatttagtcgttctgatgccgaca 14588743  T

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Target: chr6; HSP #2
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 33 - 202
Target Start/End: Original strand, 14622232 - 14622401
Alignment:
Q  33 cttggttttctttaatccaccaggggaacgaaccgacatagacttgtatagtccaccaaaatgggttcctttccaaacaaccattcatctcaaacgttac 132  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14622232 cttgggtttctttaatccaccaggggaacgaaccgacatagacttgtatagtccaccaaaatgggttcctttccaaacaaccattcatctcaaacgttac 14622331  T
Q  133 gaggttatgagaatacagtcggctgtgaagaatgattctggaagaaaatttagtcgttctgatgccgaca 202  Q
    ||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14622332 gaggttatgagaatacagtcaactgtgaagaatgattatggaagaaaatttagtcgttctgatgccgaca 14622401  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 85 - 140
Target Start/End: Original strand, 1361556 - 1361611
Alignment:
Q  85 ccaccaaaatgggttcctttccaaacaaccattcatctcaaacgttacgaggttat 140  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||| ||| ||||    
T  1361556 ccaccaaaatgggttccttttcaaacaaccattcatctcaaaccttatgagattat 1361611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 20492331 - 20492380
Alignment:
Q  78 gtatagtccaccaaaatgggttcctttccaaacaaccattcatctcaaac 127  Q
    ||||||||||||||| |||||||||||| |||||| ||||||| ||||||    
T  20492331 gtatagtccaccaaagtgggttcctttcaaaacaaacattcatttcaaac 20492380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 11530122 - 11530203
Alignment:
Q  39 tttctttaatccaccaggggaacgaaccgacatagacttgtatagtccaccaaaatgggttcctttccaaacaaccattcat 120  Q
    ||||||||||||||||  ||| | || | ||||||||  |||||| |||||||| |||||||||||| ||||||||||||||    
T  11530122 tttctttaatccaccaaaggatcaaatcaacatagacaggtatagcccaccaaagtgggttcctttcgaaacaaccattcat 11530203  T

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