View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3327_low_69 (Length: 202)
Name: NF3327_low_69
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3327_low_69 |
 | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 135; Significance: 1e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 36480771 - 36480601
Alignment:
| Q |
18 |
agattttcctaacagaatttgttgaagatactttatcaagaatgaattttgatactgcagtgctaataattgaataatggaagtaaaattgttttgggat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
36480771 |
agattttcctaacagaatttgttgaagatactttatcaagaatgaattttgatactgcagtgctaataattgaataatggaagtaaaattattttgggat |
36480672 |
T |
|
| Q |
118 |
ttgatattgaagatccaaac-nnnnnnnnggtagaagatccaaccttttcttttgtacaagaagattcatc |
187 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36480671 |
ttgatattgaagatccaaactttttttttggtagaagatccaaccttttcttttgtacaagaagattcatc |
36480601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 22201444 - 22201521
Alignment:
| Q |
59 |
atgaattttgatactgcagtgctaataa-ttgaataatggaagtaaaattgttttgggatttgatattgaagatccaa |
135 |
Q |
| |
|
|||||||||||||||||| ||||| ||| ||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
22201444 |
atgaattttgatactgcaatgctagtaacttgaataatggaaataaaattgttttgggatttgacgttgaagatccaa |
22201521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 22201512 - 22201549
Alignment:
| Q |
150 |
gaagatccaaccttttcttttgtacaagaagattcatc |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22201512 |
gaagatccaaccttttcttttgtacaagaagattcatc |
22201549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 71
Target Start/End: Original strand, 10316 - 10345
Alignment:
| Q |
42 |
aagatactttatcaagaatgaattttgata |
71 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10316 |
aagatactttatcaagaatgaattttgata |
10345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University