View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3327_low_7 (Length: 475)

Name: NF3327_low_7
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3327_low_7
NF3327_low_7
[»] chr3 (27 HSPs)
chr3 (34-459)||(958812-959237)
chr3 (33-458)||(39579871-39580296)
chr3 (33-404)||(25041369-25041742)
chr3 (33-458)||(4533449-4533873)
chr3 (81-458)||(39674156-39674532)
chr3 (33-384)||(42864321-42864669)
chr3 (90-404)||(53330421-53330738)
chr3 (90-404)||(53334105-53334422)
chr3 (90-404)||(53337782-53338099)
chr3 (34-142)||(21869148-21869256)
chr3 (96-251)||(22976519-22976673)
chr3 (155-251)||(29359917-29360011)
chr3 (34-95)||(22976432-22976493)
chr3 (256-318)||(22976735-22976797)
chr3 (331-385)||(39579863-39579917)
chr3 (331-385)||(53330746-53330800)
chr3 (331-385)||(53334430-53334484)
chr3 (331-385)||(53338107-53338161)
chr3 (256-374)||(29359730-29359845)
chr3 (40-95)||(29360074-29360129)
chr3 (331-385)||(4533441-4533495)
chr3 (96-129)||(29360014-29360047)
chr3 (331-385)||(39674148-39674202)
chr3 (331-384)||(25041308-25041361)
chr3 (420-457)||(53330754-53330791)
chr3 (420-457)||(53334438-53334475)
chr3 (420-457)||(53338115-53338152)
[»] scaffold0017 (2 HSPs)
scaffold0017 (33-458)||(37725-38150)
scaffold0017 (334-385)||(38107-38158)
[»] chr7 (27 HSPs)
chr7 (33-404)||(19927928-19928298)
chr7 (33-458)||(30947534-30947962)
chr7 (33-459)||(25443576-25444001)
chr7 (33-196)||(40819605-40819768)
chr7 (33-195)||(26279619-26279781)
chr7 (225-458)||(40819769-40820001)
chr7 (250-456)||(37245166-37245373)
chr7 (163-254)||(37243003-37243094)
chr7 (129-249)||(22205102-22205222)
chr7 (129-249)||(22229517-22229637)
chr7 (96-251)||(45280932-45281088)
chr7 (333-458)||(26279779-26279904)
chr7 (96-214)||(22293061-22293179)
chr7 (254-383)||(45280729-45280859)
chr7 (331-385)||(15043301-15043355)
chr7 (331-385)||(26279858-26279912)
chr7 (331-385)||(36630392-36630446)
chr7 (44-95)||(22205008-22205059)
chr7 (256-385)||(22205276-22205409)
chr7 (419-458)||(22205362-22205401)
chr7 (256-385)||(22229330-22229463)
chr7 (419-458)||(22229338-22229377)
chr7 (44-95)||(22229680-22229731)
chr7 (44-94)||(22293205-22293255)
chr7 (331-385)||(40819955-40820009)
chr7 (98-138)||(36630746-36630786)
chr7 (331-385)||(30947526-30947580)
[»] chr6 (8 HSPs)
chr6 (34-458)||(21112077-21112490)
chr6 (33-385)||(8862080-8862433)
chr6 (214-404)||(11382546-11382737)
chr6 (331-385)||(11382484-11382538)
chr6 (331-385)||(21112069-21112123)
chr6 (420-455)||(8862021-8862056)
chr6 (257-312)||(34752238-34752293)
chr6 (420-458)||(11382492-11382530)
[»] chr2 (8 HSPs)
chr2 (33-458)||(14811253-14811679)
chr2 (33-375)||(14314062-14314410)
chr2 (139-243)||(29081109-29081213)
chr2 (331-385)||(14314437-14314491)
chr2 (331-385)||(14811245-14811299)
chr2 (96-140)||(13043622-13043666)
chr2 (420-458)||(14314445-14314483)
chr2 (420-456)||(14314374-14314410)
[»] chr4 (5 HSPs)
chr4 (33-404)||(54260168-54260528)
chr4 (146-224)||(26261246-26261323)
chr4 (332-378)||(26261054-26261100)
chr4 (420-454)||(54260117-54260151)
chr4 (96-137)||(26261383-26261424)
[»] chr5 (11 HSPs)
chr5 (33-396)||(8871283-8871647)
chr5 (33-318)||(13854368-13854653)
chr5 (131-404)||(36606208-36606480)
chr5 (99-251)||(6665857-6666009)
chr5 (96-251)||(32659069-32659224)
chr5 (33-100)||(36606474-36606541)
chr5 (39-95)||(6666038-6666094)
chr5 (277-385)||(6665692-6665796)
chr5 (182-235)||(30131347-30131399)
chr5 (33-79)||(32659267-32659313)
chr5 (96-137)||(30131211-30131252)
[»] chr8 (22 HSPs)
chr8 (33-458)||(29054539-29054966)
chr8 (33-377)||(21076028-21076373)
chr8 (33-377)||(20289398-20289743)
chr8 (33-458)||(17630837-17631252)
chr8 (33-458)||(17068173-17068578)
chr8 (33-403)||(17579695-17580045)
chr8 (123-458)||(10861549-10861884)
chr8 (33-458)||(34964423-34964834)
chr8 (99-250)||(3046537-3046688)
chr8 (326-458)||(17580052-17580184)
chr8 (33-108)||(10861482-10861557)
chr8 (256-385)||(3046757-3046884)
chr8 (331-385)||(29054531-29054585)
chr8 (34-94)||(3046447-3046507)
chr8 (331-385)||(17068165-17068219)
chr8 (331-385)||(17580138-17580192)
chr8 (331-385)||(17631206-17631260)
chr8 (331-385)||(20289330-20289384)
chr8 (420-458)||(20289338-20289376)
chr8 (331-385)||(21075960-21076014)
chr8 (420-458)||(21075968-21076006)
chr8 (331-385)||(34964788-34964842)
[»] chr1 (5 HSPs)
chr1 (36-458)||(46397774-46398193)
chr1 (96-250)||(33368964-33369114)
chr1 (256-375)||(33368779-33368895)
chr1 (256-385)||(23206235-23206363)
chr1 (339-385)||(29096227-29096273)
[»] scaffold0274 (1 HSPs)
scaffold0274 (343-385)||(14400-14442)


Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 34 - 459
Target Start/End: Complemental strand, 959237 - 958812
Alignment:
Q  34 aacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagagt 133  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  959237 aacatctttgtctaatgttgactacttaacggttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagagt 959138  T
Q  134 agaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccatatatttttaggttagaagagacaatatgattttg 233  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  959137 agaattcaatcagtggtaatggttagaagagagaatagctatttctatgtggtgacgagaaaccctatttttttaggttagaagagacaatatgattttg 959038  T
Q  234 atagtgctgccagacttgataagtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtcannnnnnnccttcaaa 333  Q
    |||| |||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  959037 atagcgctgccagacttgataggtgtcagagtataagtaagctgtgtcggagtacaagttagtcgtatccgacacgtatcagtcatttttttccttcaaa 958938  T
Q  334 aaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgnnnnnnnnnnnnnntaatattaattgccc 433  Q
    ||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||    
T  958937 aaataaatattaaatgtttgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaaaatataaatattaattgccc 958838  T
Q  434 gatacttttccgatacccgtatcggt 459  Q
    ||||||||||||||||||||||||||    
T  958837 gatacttttccgatacccgtatcggt 958812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 33 - 458
Target Start/End: Complemental strand, 39580296 - 39579871
Alignment:
Q  33 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  39580296 gaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacaaag 39580197  T
Q  133 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccatatatttttaggttagaagagacaatatgatttt 232  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||    
T  39580196 tagaattcaatcagtggtaatggttggtagagagaatagctattgctatgtggtgacgagaaaccctatttttttaggttagaagagacattatgatttt 39580097  T
Q  233 gatagtgctgccagacttgataagtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtcannnnnnnccttcaa 332  Q
    ||||| ||||||||| |||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||       | |||||    
T  39580096 gatagcgctgccagagttgataggtgtcggagtataagtaagctgtgccggagtacaagttagtcgtatccgacacgtatcggtcatttttttctttcaa 39579997  T
Q  333 aaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgnnnnnnnnnnnnnntaatattaattgcc 432  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||               |||||||||||||    
T  39579996 aaaataaatattaattgtccgatacttctccgatacgcatatcgggacgtatccgacacgtattggtcattgtttttcaaaaaaataaatattaattgcc 39579897  T
Q  433 cgatacttttccgatacccgtatcgg 458  Q
    ||||||||||||||||||||||||||    
T  39579896 cgatacttttccgatacccgtatcgg 39579871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 33 - 404
Target Start/End: Complemental strand, 25041742 - 25041369
Alignment:
Q  33 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25041742 gaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 25041643  T
Q  133 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccata-tatttttaggttagaagagacaatatgattt 231  Q
    ||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||    
T  25041642 tagaatttaatcagtggtaatggttaaaaaagagaatagctattgctatgtggtgacgagaaaccctattttttttaggttagaagagacaatatgattt 25041543  T
Q  232 tgatagtgctgccagacttgataagtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtca-nnnnnnnccttc 330  Q
    |||||| || ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||         ||||    
T  25041542 tgatagcgcagccagacttgataggtgtcggagtataagtaagctgtgtcggagtacaagttagtcgtatccgacacgtatcagtcattttatttacttc 25041443  T
Q  331 aaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattg 404  Q
    |||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  25041442 aaaaaataaatattaattgtccgatacttctccaatacgcgtattgggacgtatccgacacgtatcggtcattg 25041369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 33 - 458
Target Start/End: Complemental strand, 4533873 - 4533449
Alignment:
Q  33 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||||||| |||||||||||||| |||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4533873 gaacatctttgtctaatgttgactaattaacagttaacaataatttatatcgaaaacaaacagcaaaagaaacataacattagagagaagagaaacagag 4533774  T
Q  133 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccatatatttttaggttagaagagacaatatgatttt 232  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||  ||||||||||||||||| |||||||||||    
T  4533773 tagaattcaataagtggtaatggttagaagagagaatagctattgttatgtggtgacgagaaaccctattattttaggttagaagagataatatgatttt 4533674  T
Q  233 gatagtgctgccagacttgataagtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtcannnnnnnccttcaa 332  Q
    ||||| ||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| ||||       |||||||    
T  4533673 gatagcgctgccaaacttgataggtgtcggagtataagtaagctgtgtcggagtacaagttagtcgtatctgacgcgtatcggtcatttttttccttcaa 4533574  T
Q  333 aaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgnnnnnnnnnnnnnntaatattaattgcc 432  Q
    |||||||||| ||| |||| ||||||||| ||||||||||||||| ||||||||||||| ||||||||||||               |||||||||||||    
T  4533573 aaaataaataataattgtctgatacttct-cgatacgcgtatcggaacgtatccgacacatatcggtcattgtttttcaaaaaaataaatattaattgcc 4533475  T
Q  433 cgatacttttccgatacccgtatcgg 458  Q
    ||||||||||||||||||||||||||    
T  4533474 cgatacttttccgatacccgtatcgg 4533449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 81 - 458
Target Start/End: Complemental strand, 39674532 - 39674156
Alignment:
Q  81 atcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgcta 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  39674532 atcgaaaacaaacagcagaagaaacataacattagagagaagagaaacggagtagaattcaatcagtggtaatg--tagaagagagaatagctattgcta 39674435  T
Q  181 tgtggtgacgagaaaccatatatttttaggttagaagagacaatatgattttgatagtgctgccagacttgataagtgtcggagtataagtaagttgtgt 280  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||    
T  39674434 tgtggtgacgagaaaccctatttttttaggttagaagagacaatatgattttgatagcgctgtcagacttgataggtgtcggagtataagtaagttgtgt 39674335  T
Q  281 cggagtacaagttagtcgtatccgacacgtatcagtc-annnnnnnccttcaaaaaataaatattaactgtccgatacttctccgatacgcgtatcggga 379  Q
    ||||||||||||||||||||||||||||||||| |||         |||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  39674334 cggagtacaagttagtcgtatccgacacgtatcggtctttttttttccttcaaaaaataaatattaactgtccgatacttttgcgatacgcgtatcggga 39674235  T
Q  380 cgtatccgacacgtatcggtcattgnnnnnnnnnnnnnntaatattaattgcccgatacttttccgatacccgtatcgg 458  Q
    |||||||||||||||||||||||||               |||||||||||||||||||||||| ||||||||||||||    
T  39674234 cgtatccgacacgtatcggtcattgttttttaaaaaaataaatattaattgcccgatacttttctgatacccgtatcgg 39674156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 33 - 384
Target Start/End: Complemental strand, 42864669 - 42864321
Alignment:
Q  33 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||||||| ||||||| |||||||||||||    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  42864669 gaacatctttgtctaatggtgactacttaaca----tcagtaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacatag 42864574  T
Q  133 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccatatatttttaggttagaagagacaatatgatttt 232  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  42864573 tagaattcaattagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatttttttaggttagaagagacaatatgatttt 42864474  T
Q  233 gatagtgctgccagacttgataagtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtca-nnnnnnnccttca 331  Q
    ||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||        ||||||    
T  42864473 gatagcgctgccagacttgataggtgtcggagtataagtaagctgtgtcggagtacaagttagtcgtatccgacatgtatcggtcattttttttccttca 42864374  T
Q  332 aaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtat 384  Q
    |||||||||||||||||||||||||||||||||||||  || |||||||||||    
T  42864373 aaaaataaatattaactgtccgatacttctccgatacaagtgtcgggacgtat 42864321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 90 - 404
Target Start/End: Original strand, 53330421 - 53330738
Alignment:
Q  90 aaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgac 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  53330421 aaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtgataatggttagaagagagaatagctattgctatgtggtgac 53330520  T
Q  190 gagaaacc--atatatttttaggttagaagagacaatatgattttgatagtgctgccagacttgataagtgtcggagtataagtaagttgtgtcggagta 287  Q
    ||||||||  || | |||||  |||||||||||||||||||||||| ||| ||| |||||||||||| ||||| ||||||||||||| ||||||||||||    
T  53330521 gagaaaccctatttttttttttgttagaagagacaatatgattttggtagcgcttccagacttgataggtgtccgagtataagtaagctgtgtcggagta 53330620  T
Q  288 caagttagtcgtatccgacacgtatcagtca-nnnnnnnccttcaaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatcc 386  Q
    |||||||||||||||||||||||||| | ||        |||||||||||||||||||||||| ||||| ||| || ||||||||||||||||||||| |    
T  53330621 caagttagtcgtatccgacacgtatcggacattttttttccttcaaaaaataaatattaactgcccgatgcttttctgatacgcgtatcgggacgtattc 53330720  T
Q  387 gacacgtatcggtcattg 404  Q
    ||||||||| ||||||||    
T  53330721 gacacgtattggtcattg 53330738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 90 - 404
Target Start/End: Original strand, 53334105 - 53334422
Alignment:
Q  90 aaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgac 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  53334105 aaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtgataatggttagaagagagaatagctattgctatgtggtgac 53334204  T
Q  190 gagaaacc--atatatttttaggttagaagagacaatatgattttgatagtgctgccagacttgataagtgtcggagtataagtaagttgtgtcggagta 287  Q
    ||||||||  || | |||||  |||||||||||||||||||||||| ||| ||| |||||||||||| ||||| ||||||||||||| ||||||||||||    
T  53334205 gagaaaccctatttttttttttgttagaagagacaatatgattttggtagcgcttccagacttgataggtgtccgagtataagtaagctgtgtcggagta 53334304  T
Q  288 caagttagtcgtatccgacacgtatcagtca-nnnnnnnccttcaaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatcc 386  Q
    |||||||||||||||||||||||||| | ||        |||||||||||||||||||||||| ||||| ||| || ||||||||||||||||||||| |    
T  53334305 caagttagtcgtatccgacacgtatcggacattttttttccttcaaaaaataaatattaactgcccgatgcttttctgatacgcgtatcgggacgtattc 53334404  T
Q  387 gacacgtatcggtcattg 404  Q
    ||||||||| ||||||||    
T  53334405 gacacgtattggtcattg 53334422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 90 - 404
Target Start/End: Original strand, 53337782 - 53338099
Alignment:
Q  90 aaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgac 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  53337782 aaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtgataatggttagaagagagaatagctattgctatgtggtgac 53337881  T
Q  190 gagaaacc--atatatttttaggttagaagagacaatatgattttgatagtgctgccagacttgataagtgtcggagtataagtaagttgtgtcggagta 287  Q
    ||||||||  || | |||||  |||||||||||||||||||||||| ||| ||| |||||||||||| ||||| ||||||||||||| ||||||||||||    
T  53337882 gagaaaccctatttttttttttgttagaagagacaatatgattttggtagcgcttccagacttgataggtgtccgagtataagtaagctgtgtcggagta 53337981  T
Q  288 caagttagtcgtatccgacacgtatcagtca-nnnnnnnccttcaaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatcc 386  Q
    |||||||||||||||||||||||||| | ||        |||||||||||||||||||||||| ||||| ||| || ||||||||||||||||||||| |    
T  53337982 caagttagtcgtatccgacacgtatcggacattttttttccttcaaaaaataaatattaactgcccgatgcttttctgatacgcgtatcgggacgtattc 53338081  T
Q  387 gacacgtatcggtcattg 404  Q
    ||||||||| ||||||||    
T  53338082 gacacgtattggtcattg 53338099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 34 - 142
Target Start/End: Complemental strand, 21869256 - 21869148
Alignment:
Q  34 aacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagagt 133  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  21869256 aacatctttgtctaatgttgactacttaacagttaacactaatttatattgaaaacaaacagcagaagaaacataacattagagagaagagaaacatagt 21869157  T
Q  134 agaattcaa 142  Q
    |||||||||    
T  21869156 agaattcaa 21869148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 96 - 251
Target Start/End: Original strand, 22976519 - 22976673
Alignment:
Q  96 cagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaa 195  Q
    ||||||||||||  |||||||||||| ||||||| |||||||||||||| |||||||||||||||||||  ||||||||| |||||||||||||||||||    
T  22976519 cagaagaaacatggcattagagagaaaagaaacatagtagaattcaatcggtggtaatggttagaagaggaaatagctatcgctatgtggtgacgagaaa 22976618  T
Q  196 ccatatatttttaggttagaagagacaatatgattttgatagtgctgccagacttg 251  Q
    || ||| ||||| ||||| ||||||||||||| ||||||||| ||||| |||||||    
T  22976619 ccctat-tttttgggttaaaagagacaatatgtttttgatagcgctgctagacttg 22976673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 155 - 251
Target Start/End: Complemental strand, 29360011 - 29359917
Alignment:
Q  155 gttagaagagagaatagctattgctatgtggtgacgagaaaccatatatttttaggttagaagagacaatatgattttgatagtgctgccagacttg 251  Q
    |||||||||| |||||||||| ||||| ||||||||||||||  ||| ||||| ||||||||||||||||||| ||||||||| |||  ||||||||    
T  29360011 gttagaagag-gaatagctatcgctatatggtgacgagaaacactat-tttttgggttagaagagacaatatgtttttgatagcgctatcagacttg 29359917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 22976432 - 22976493
Alignment:
Q  34 aacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacag 95  Q
    |||| |||| ||||||||||||||||||| ||||| ||||||||||||||||||| ||||||    
T  22976432 aacacctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaataaacag 22976493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 256 - 318
Target Start/End: Original strand, 22976735 - 22976797
Alignment:
Q  256 gtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtca 318  Q
    |||||||||||||||| ||| || ||||| |||||||||| ||||||||| ||||||||||||    
T  22976735 gtgtcggagtataagttagtcgtatcggaatacaagttagccgtatccgatacgtatcagtca 22976797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 331 - 385
Target Start/End: Complemental strand, 39579917 - 39579863
Alignment:
Q  331 aaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 385  Q
    |||||||||||||||| || ||||||||| |||||||| ||||||||||||||||    
T  39579917 aaaaaataaatattaattgcccgatacttttccgatacccgtatcgggacgtatc 39579863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 331 - 385
Target Start/End: Original strand, 53330746 - 53330800
Alignment:
Q  331 aaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 385  Q
    |||||||||||||||| |||||||||||| |||||||||||||||| | ||||||    
T  53330746 aaaaaataaatattaattgtccgatacttttccgatacgcgtatcgaggcgtatc 53330800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 331 - 385
Target Start/End: Original strand, 53334430 - 53334484
Alignment:
Q  331 aaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 385  Q
    |||||||||||||||| |||||||||||| |||||||||||||||| | ||||||    
T  53334430 aaaaaataaatattaattgtccgatacttttccgatacgcgtatcgaggcgtatc 53334484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 331 - 385
Target Start/End: Original strand, 53338107 - 53338161
Alignment:
Q  331 aaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 385  Q
    |||||||||||||||| |||||||||||| |||||||||||||||| | ||||||    
T  53338107 aaaaaataaatattaattgtccgatacttttccgatacgcgtatcgaggcgtatc 53338161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 374
Target Start/End: Complemental strand, 29359845 - 29359730
Alignment:
Q  256 gtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtcannnnnnnccttcaaaaaataaatattaactgtccgat 355  Q
    |||||||||||||||| |   ||||||||||||||||||| |||||||||||| ||||| | |       |    |||||||||||||||| || |||||    
T  29359845 gtgtcggagtataagttacccgtgtcggagtacaagttagccgtatccgacacatatcaataatttttttc---aaaaaaataaatattaaatgcccgat 29359749  T
Q  356 acttctccgatacgcgtat 374  Q
    ||||||| |||||||||||    
T  29359748 acttctctgatacgcgtat 29359730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 29360129 - 29360074
Alignment:
Q  40 tttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacag 95  Q
    ||||||||||||||||| ||| | ||||| |||||||||| |||||||||||||||    
T  29360129 tttatctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacag 29360074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 385
Target Start/End: Complemental strand, 4533495 - 4533441
Alignment:
Q  331 aaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 385  Q
    |||||||||||||||| || ||||||||| |||||||| |||||||| |||||||    
T  4533495 aaaaaataaatattaattgcccgatacttttccgatacccgtatcggaacgtatc 4533441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 29360047 - 29360014
Alignment:
Q  96 cagaagaaacataacattagagagaagagaaaca 129  Q
    ||||||||||||||||||||||||||||||||||    
T  29360047 cagaagaaacataacattagagagaagagaaaca 29360014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 385
Target Start/End: Complemental strand, 39674202 - 39674148
Alignment:
Q  331 aaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 385  Q
    |||||||||||||||| || ||||||||| || ||||| ||||||||||| ||||    
T  39674202 aaaaaataaatattaattgcccgatacttttctgatacccgtatcgggacatatc 39674148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 384
Target Start/End: Complemental strand, 25041361 - 25041308
Alignment:
Q  331 aaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtat 384  Q
    |||||||||||||||| ||  |||||||| || ||||| |||||||||||||||    
T  25041361 aaaaaataaatattaattgcgcgatacttttctgatactcgtatcgggacgtat 25041308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 457
Target Start/End: Original strand, 53330754 - 53330791
Alignment:
Q  420 aatattaattgcccgatacttttccgatacccgtatcg 457  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  53330754 aatattaattgtccgatacttttccgatacgcgtatcg 53330791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 457
Target Start/End: Original strand, 53334438 - 53334475
Alignment:
Q  420 aatattaattgcccgatacttttccgatacccgtatcg 457  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  53334438 aatattaattgtccgatacttttccgatacgcgtatcg 53334475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 457
Target Start/End: Original strand, 53338115 - 53338152
Alignment:
Q  420 aatattaattgcccgatacttttccgatacccgtatcg 457  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  53338115 aatattaattgtccgatacttttccgatacgcgtatcg 53338152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 33 - 458
Target Start/End: Original strand, 37725 - 38150
Alignment:
Q  33 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37725 gaacatctttgtctaatgttgactacttaacagttaacacaaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 37824  T
Q  133 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccatatatttttaggttagaagagacaatatgatttt 232  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||    
T  37825 tagaattcaatcagcggtaatggttagaagagaaaatagctattgctatgtggtgacgagaaaccctatttttttaggttaaaagagacaatatgatttt 37924  T
Q  233 gatagtgctgccagacttgataagtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtcannnnnnnccttcaa 332  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||       |||||||    
T  37925 gatagcgctgccagacttgataagtgtcggagtataagtaagctgtgttggagtacaagttagtcgtatccgacacgtatcggtcatttttttccttcaa 38024  T
Q  333 aaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgnnnnnnnnnnnnnntaatattaattgcc 432  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||               |||||||||||||    
T  38025 aaaataaatattaactgtccgatacttctccgatacgcgtattgggacgtatccgacacgtatcggtcattgtttttttaagaaataaatattaattgcc 38124  T
Q  433 cgatacttttccgatacccgtatcgg 458  Q
    ||||||||||| ||||||||||||||    
T  38125 cgatacttttctgatacccgtatcgg 38150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 385
Target Start/End: Original strand, 38107 - 38158
Alignment:
Q  334 aaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 385  Q
    ||||||||||||| || ||||||||| || ||||| ||||||||||||||||    
T  38107 aaataaatattaattgcccgatacttttctgatacccgtatcgggacgtatc 38158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 33 - 404
Target Start/End: Original strand, 19927928 - 19928298
Alignment:
Q  33 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19927928 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 19928027  T
Q  133 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccatatatttttaggttagaagagacaatatgatttt 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||    
T  19928028 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccatatttttttaggttagaagagac--tatgatttt 19928125  T
Q  233 gatagtgctgccagacttgataagtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtca-nnnnnnnccttca 331  Q
    ||||| ||||||||||||||||||||||   ||||||||||| |||||||||||||||||||||||||| | ||||||||| ||||        ||||||    
T  19928126 gatagcgctgccagacttgataagtgtcaaggtataagtaagctgtgtcggagtacaagttagtcgtattcaacacgtatcggtcattttttttccttca 19928225  T
Q  332 aaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattg 404  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19928226 aaaaataaatattaactgtctgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattg 19928298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 33 - 458
Target Start/End: Complemental strand, 30947962 - 30947534
Alignment:
Q  33 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||| ||    
T  30947962 gaacatctttgtctaatgttgactatttaacagttaacactaatttatatcgaaaacaaacggcagaagaaacataacatc-gagagaagagaaacatag 30947864  T
Q  133 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccatatatttttaggttagaagagacaatatgatttt 232  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||    
T  30947863 tagaattcaatcggtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatttttttagattagaagagacaatatgatttt 30947764  T
Q  233 gatagtgctgccagacttgataagtgtcggagtataagtaagttgtgtcggagtacaagt----tagtcgtatccgacacgtatcagtcannnnnnncct 328  Q
    ||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||    ||||||||||||||||||||||||||       |||    
T  30947763 gatagcgctgccagacttgataggtgtcggagtataagtaagctgtgtcggagtacaagttagttagtcgtatccgacacgtatcagtcatttttttcct 30947664  T
Q  329 tcaaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgnnnnnnnnnnnnnntaatattaat 428  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||               |||||||||    
T  30947663 tcaaaaaataaatattaattgtctgatacttctccgatacgcgtatcgggacgtatccgacacgtatcagtcattgtttttcaaaaaaataaatattaat 30947564  T
Q  429 tgcccgatacttttccgatacccgtatcgg 458  Q
    |||||||||||||| |||||||||||||||    
T  30947563 tgcccgatactttttcgatacccgtatcgg 30947534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 33 - 459
Target Start/End: Complemental strand, 25444001 - 25443576
Alignment:
Q  33 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25444001 gaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaatagcagaagaaacataacattagagagaagagaaacagag 25443902  T
Q  133 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccatatatttttaggttagaagagacaatatgatttt 232  Q
    |||||||||||| |||||||||||||||| ||||||||||||||| |||||||||| |||||||| |   |||||||||||||||| |||||||||||||    
T  25443901 tagaattcaatctgtggtaatggttagaaaagagaatagctattgatatgtggtgatgagaaacccttattttttaggttagaagaaacaatatgatttt 25443802  T
Q  233 gatagtgctgccagacttgataagtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtcannnnnnnccttcaa 332  Q
    ||||| |||||||||||||||| |||||||| |||||||||| ||||| ||||||||||||| | |||||||||||||||| ||||       |||||||    
T  25443801 gatagcgctgccagacttgataggtgtcggaatataagtaagatgtgt-ggagtacaagttaattgtatccgacacgtatcggtca-ttttttccttcaa 25443704  T
Q  333 aaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgnnnnnnnnnnnnnnt-aatattaattgc 431  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||              | ||||||||||||    
T  25443703 aaaataaatattaattgtccgatacttctccgatacgcgtatcgggatgtatctgacacgtatcggtcattgttttacaaaaaaaataaatattaattgc 25443604  T
Q  432 ccgatacttttccgatacccgtatcggt 459  Q
     |||||||||||||||||||||||||||    
T  25443603 tcgatacttttccgatacccgtatcggt 25443576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 33 - 196
Target Start/End: Original strand, 40819605 - 40819768
Alignment:
Q  33 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40819605 gaacatctttatctaatgttgactacttaactgttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 40819704  T
Q  133 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaac 196  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40819705 tagaattcaataagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaac 40819768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 33 - 195
Target Start/End: Original strand, 26279619 - 26279781
Alignment:
Q  33 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||||||| || |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26279619 gaacatctttgtccaatgttgactacttaacagttaacattaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 26279718  T
Q  133 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaa 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26279719 tagaattcaatcagtggtaatggttagaagagagaatagctattgttatgtggtgacgagaaa 26279781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 225 - 458
Target Start/End: Original strand, 40819769 - 40820001
Alignment:
Q  225 atgattttgatagtgctgccagacttgataagtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtcannnnnn 324  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||          
T  40819769 atgattttgatagcgctgccagacttgataagtgtcggagtataagtaagctgtgttggagtacaagttagtcgtatccgacacgtatcggtcatttttt 40819868  T
Q  325 nccttcaaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgnnnnnnnnnnnnnntaatat 424  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||    
T  40819869 t-cttcaaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaaaaaataaatat 40819967  T
Q  425 taattgcccgatacttttccgatacccgtatcgg 458  Q
    ||||| ||||||||||||||||||||||||||||    
T  40819968 taatttcccgatacttttccgatacccgtatcgg 40820001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 250 - 456
Target Start/End: Original strand, 37245166 - 37245373
Alignment:
Q  250 tgataagtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtcannnnnnn-ccttcaaaaaataaatattaact 348  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||        ||||||||||||||||||||| |    
T  37245166 tgataggtgtcggagtataagtaagctgtgtcggagtacaagttagtcgtatccgacacgtatcggtcattttttttccttcaaaaaataaatattaatt 37245265  T
Q  349 gtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgnnnnnnnnnnnnnntaatattaattgcccgatacttttccgata 448  Q
    ||| ||||||| |||||||||||||||| |||||||| ||||||||||||||||||               || ||||||||||||||||||||||||||    
T  37245266 gtctgatacttttccgatacgcgtatcgcgacgtatctgacacgtatcggtcattgtttttcaaaaaaataaacattaattgcccgatacttttccgata 37245365  T
Q  449 cccgtatc 456  Q
    ||||||||    
T  37245366 cccgtatc 37245373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 163 - 254
Target Start/End: Original strand, 37243003 - 37243094
Alignment:
Q  163 agagaatagctattgctatgtggtgacgagaaaccatatatttttaggttagaagagacaatatgattttgatagtgctgccagacttgata 254  Q
    ||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37243003 agagaatagttattgctatgtggtgacgagaaaccctatttttttaggttagaagagacaatatgattttgatagcgctgccagacttgata 37243094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 129 - 249
Target Start/End: Original strand, 22205102 - 22205222
Alignment:
Q  129 agagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccatatatttttaggttagaagagacaatatga 228  Q
    |||||||||||||||| | ||||||||||||||||| |||||||||| ||||| ||||||||||||||| ||| ||||| || |||||||||||| |||     
T  22205102 agagtagaattcaatcggcggtaatggttagaagagggaatagctatcgctatttggtgacgagaaaccctatttttttgggatagaagagacaaaatgt 22205201  T
Q  229 ttttgatagtgctgccagact 249  Q
    |||| ||||||||| ||||||    
T  22205202 tttttatagtgctggcagact 22205222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 129 - 249
Target Start/End: Complemental strand, 22229637 - 22229517
Alignment:
Q  129 agagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccatatatttttaggttagaagagacaatatga 228  Q
    |||||||||||||||| | ||||||||||||||||| |||||||||| ||||| ||||||||||||||| ||| ||||| || |||||||||||| |||     
T  22229637 agagtagaattcaatcggcggtaatggttagaagagggaatagctatcgctatttggtgacgagaaaccctatttttttgggatagaagagacaaaatgt 22229538  T
Q  229 ttttgatagtgctgccagact 249  Q
    |||| ||||||||| ||||||    
T  22229537 tttttatagtgctggcagact 22229517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 96 - 251
Target Start/End: Complemental strand, 45281088 - 45280932
Alignment:
Q  96 cagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaa 195  Q
    |||||||||||| |||||||||  |||||||||| |||||||| ||||  ||| || |||||||||||| ||||| |||| ||| |||||||| ||||||    
T  45281088 cagaagaaacatgacattagagcaaagagaaacatagtagaatacaattggtgatattggttagaagagggaataactatcgctgtgtggtgatgagaaa 45280989  T
Q  196 ccata-tatttttaggttagaagagacaatatgattttgatagtgctgccagacttg 251  Q
    || || | ||||| ||||||||||||||||||| |||| || | || ||||||||||    
T  45280988 ccctattttttttgggttagaagagacaatatgttttttattgcgcggccagacttg 45280932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 333 - 458
Target Start/End: Original strand, 26279779 - 26279904
Alignment:
Q  333 aaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgnnnnnnnnnnnnnntaatattaattgcc 432  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||               |||||||||||||    
T  26279779 aaaataaatattaacttcccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcagtcattgtttttcaaaaaaataaatattaattgcc 26279878  T
Q  433 cgatacttttccgatacccgtatcgg 458  Q
    |||||||||||||||||  |||||||    
T  26279879 cgatacttttccgatacgtgtatcgg 26279904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 22293179 - 22293061
Alignment:
Q  96 cagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaa 195  Q
    |||| ||||||||  ||||||||||||||||||| |||||||||  ||| ||||||||||||||||||| ||||| |||| | ||| |||||||||||||    
T  22293179 cagaggaaacatagtattagagagaagagaaacatagtagaatttgatcggtggtaatggttagaagagggaataactatcgttatatggtgacgagaaa 22293080  T
Q  196 ccatatatttttaggttag 214  Q
    || ||  ||||| ||||||    
T  22293079 ccctacttttttgggttag 22293061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 254 - 383
Target Start/End: Complemental strand, 45280859 - 45280729
Alignment:
Q  254 aagtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtcannnnnnnccttcaaaaaa-taaatattaactgtcc 352  Q
    |||| ||||||||||||| ||  ||||| |||||||||||||||||||| |||||||||| || |          |||||||| |||||||||| || ||    
T  45280859 aagtatcggagtataagttagccgtgtcagagtacaagttagtcgtatctgacacgtatcggtaatttttttttctcaaaaaaataaatattaattgacc 45280760  T
Q  353 gatacttctccgatacgcgtatcgggacgta 383  Q
    ||||||||||| |||||||||||||||||||    
T  45280759 gatacttctccaatacgcgtatcgggacgta 45280729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 331 - 385
Target Start/End: Original strand, 15043301 - 15043355
Alignment:
Q  331 aaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 385  Q
    |||||||||||||||| || |||||||||| ||||||| ||||||||||||||||    
T  15043301 aaaaaataaatattaattggccgatacttcaccgatacacgtatcgggacgtatc 15043355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 331 - 385
Target Start/End: Original strand, 26279858 - 26279912
Alignment:
Q  331 aaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 385  Q
    |||||||||||||||| || ||||||||| ||||||||| |||||||||||||||    
T  26279858 aaaaaataaatattaattgcccgatacttttccgatacgtgtatcgggacgtatc 26279912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 331 - 385
Target Start/End: Complemental strand, 36630446 - 36630392
Alignment:
Q  331 aaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 385  Q
    |||||||||||||||| |||| |||||||||||||||| ||||||||||| ||||    
T  36630446 aaaaaataaatattaattgtcagatacttctccgatacacgtatcgggacatatc 36630392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 95
Target Start/End: Original strand, 22205008 - 22205059
Alignment:
Q  44 tctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacag 95  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||| ||||||    
T  22205008 tctaatgttgactacctaatagttaacactaatttatatcgaaaagaaacag 22205059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 385
Target Start/End: Original strand, 22205276 - 22205409
Alignment:
Q  256 gtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtc----annnnnnnccttcaaaaaataaatattaactgtc 351  Q
    |||||| ||||||||| ||  ||||||||||||||||||| | ||||| |||||||||||||            | |||||||||  |||||||| || |    
T  22205276 gtgtcgaagtataagttagccgtgtcggagtacaagttagccttatccaacacgtatcagtcttttttttttttctttcaaaaaaataatattaattgcc 22205375  T
Q  352 cgatacttctccgatacgcgtatcgggacgtatc 385  Q
    |||||||| ||||||||||||||||| |||||||    
T  22205376 cgatacttttccgatacgcgtatcggaacgtatc 22205409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 419 - 458
Target Start/End: Original strand, 22205362 - 22205401
Alignment:
Q  419 taatattaattgcccgatacttttccgatacccgtatcgg 458  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  22205362 taatattaattgcccgatacttttccgatacgcgtatcgg 22205401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 385
Target Start/End: Complemental strand, 22229463 - 22229330
Alignment:
Q  256 gtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtcannnnnnn----ccttcaaaaaataaatattaactgtc 351  Q
    |||||| ||||||||| ||  ||||||||||||||||||| | ||||| |||||||||||||            | |||||||||  |||||||| || |    
T  22229463 gtgtcgaagtataagttagccgtgtcggagtacaagttagccttatccaacacgtatcagtcttttttttttttctttcaaaaaaataatattaattgcc 22229364  T
Q  352 cgatacttctccgatacgcgtatcgggacgtatc 385  Q
    |||||||| ||||||||||||||||| |||||||    
T  22229363 cgatacttttccgatacgcgtatcggaacgtatc 22229330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 419 - 458
Target Start/End: Complemental strand, 22229377 - 22229338
Alignment:
Q  419 taatattaattgcccgatacttttccgatacccgtatcgg 458  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  22229377 taatattaattgcccgatacttttccgatacgcgtatcgg 22229338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 95
Target Start/End: Complemental strand, 22229731 - 22229680
Alignment:
Q  44 tctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacag 95  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||| ||||||    
T  22229731 tctaatgttgactacctaatagttaacactaatttatatcgaaaagaaacag 22229680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 22293255 - 22293205
Alignment:
Q  44 tctaatgttgactacttaacagttatcactaatttatatcgaaaacaaaca 94  Q
    ||||||||||||||||||| ||||| |||||||||| ||| ||||||||||    
T  22293255 tctaatgttgactacttaatagttaacactaatttagatcaaaaacaaaca 22293205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 385
Target Start/End: Original strand, 40819955 - 40820009
Alignment:
Q  331 aaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 385  Q
    |||||||||||||||| |  ||||||||| |||||||| ||||||||||||||||    
T  40819955 aaaaaataaatattaatttcccgatacttttccgatacccgtatcgggacgtatc 40820009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 36630786 - 36630746
Alignment:
Q  98 gaagaaacataacattagagagaagagaaacagagtagaat 138  Q
    ||||||||||||||||||| |||||||||||| ||||||||    
T  36630786 gaagaaacataacattagaaagaagagaaacatagtagaat 36630746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 385
Target Start/End: Complemental strand, 30947580 - 30947526
Alignment:
Q  331 aaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 385  Q
    |||||||||||||||| || ||||||||| | |||||| |||||||| |||||||    
T  30947580 aaaaaataaatattaattgcccgatactttttcgatacccgtatcggaacgtatc 30947526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 34 - 458
Target Start/End: Complemental strand, 21112490 - 21112077
Alignment:
Q  34 aacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagagt 133  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21112490 aacatctttgtctaatgttgactacttaacagttaacactaatttatatcaaaaacaaacagcagaagaaacataacattagagagaagagaaacagagt 21112391  T
Q  134 agaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccatatatttttaggttagaagagacaatatgattttg 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  21112390 agaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatttttttaggttagaagagacaatatgattttg 21112291  T
Q  234 atagtgctgccagacttgataagtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtcannnnnnnccttcaaa 333  Q
    |||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  21112290 atagcgctgccagacttgataggtgtcagagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtcatttttttccttcaaa 21112191  T
Q  334 aaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgnnnnnnnnnnnnnntaatattaattgccc 433  Q
    ||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||    
T  21112190 aaataaatattaactg-----------tccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaaaaaataaatattaattgccc 21112102  T
Q  434 gatacttttccgatacccgtatcgg 458  Q
    |||||||||||||||||||||||||    
T  21112101 gatacttttccgatacccgtatcgg 21112077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 33 - 385
Target Start/End: Complemental strand, 8862433 - 8862080
Alignment:
Q  33 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  8862433 gaacatctttgtctaatgttgaccacttaacagttatcactaatttatatcgaaaacaaacagtagaagaaacataacattatagagaagagaaacagag 8862334  T
Q  133 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccatatatttttaggttagaagagacaatatgatttt 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  8862333 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgcggtgacgagaaaccctatttttttaggttagaagagacaatatgatttt 8862234  T
Q  233 gatagtgctgccagacttgataagtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatc-agtcannnnnnnccttca 331  Q
    ||||| ||||| |||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| | |         ||||||    
T  8862233 gatagcgctgctagacttgataggtgtcggagtataagtaagctgtgtcggagtataagttagtcgtatccgacacgtatcgattattttttttccttca 8862134  T
Q  332 aaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 385  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8862133 aaaaataaatattaactatccgatacttctccgatacgcgtatcgggacgtatc 8862080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 214 - 404
Target Start/End: Complemental strand, 11382737 - 11382546
Alignment:
Q  214 gaagagacaatatgattttgatagtgctgccagacttgataagtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatc 313  Q
    |||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  11382737 gaagagacaatatgattttgatagcgctgtcagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccgacacgtatc 11382638  T
Q  314 agtca-nnnnnnnccttcaaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattg 404  Q
      |||        ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11382637 gctcattttttttccttcaaaaaataaatattaattgtccgatacttcttcgatacgcgtatcgggacgtatccgacacgtatcggtcattg 11382546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 385
Target Start/End: Complemental strand, 11382538 - 11382484
Alignment:
Q  331 aaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 385  Q
    |||||||||||||||| |||||||||||| || ||||| |||||||||| |||||    
T  11382538 aaaaaataaatattaattgtccgatacttttctgatacccgtatcgggatgtatc 11382484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 385
Target Start/End: Complemental strand, 21112123 - 21112069
Alignment:
Q  331 aaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 385  Q
    |||||||||||||||| || ||||||||| |||||||| ||||||||||| ||||    
T  21112123 aaaaaataaatattaattgcccgatacttttccgatacccgtatcgggacatatc 21112069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 455
Target Start/End: Complemental strand, 8862056 - 8862021
Alignment:
Q  420 aatattaattgcccgatacttttccgatacccgtat 455  Q
    |||||||||||||||||| |||||||||||||||||    
T  8862056 aatattaattgcccgatatttttccgatacccgtat 8862021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 34752293 - 34752238
Alignment:
Q  257 tgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtat 312  Q
    ||||||||||||||| | | ||||||| |||||||||||||||| | |||||||||    
T  34752293 tgtcggagtataagttaatcgtgtcggtgtacaagttagtcgtacctgacacgtat 34752238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 420 - 458
Target Start/End: Complemental strand, 11382530 - 11382492
Alignment:
Q  420 aatattaattgcccgatacttttccgatacccgtatcgg 458  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  11382530 aatattaattgtccgatacttttctgatacccgtatcgg 11382492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 33 - 458
Target Start/End: Complemental strand, 14811679 - 14811253
Alignment:
Q  33 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||    
T  14811679 gaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacaatagaagaaacataacattagagagaagagaaatagag 14811580  T
Q  133 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccatatatttttaggttagaagagacaatatgatttt 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||    
T  14811579 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaatcctatttttttaggttagaagagacaatatgatttt 14811480  T
Q  233 gatagtgctgccagacttgataagtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtca-nnnnnnnccttca 331  Q
     ||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||        ||||||    
T  14811479 aatagtgctgccagacttaataggtgtcggagtataagtaagctgtgtcggagtacaagttagtcgtatccgacacgtatcggtcattttttttccttca 14811380  T
Q  332 aaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgnnnnnnnnnnnnnntaatattaattgc 431  Q
    ||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||               ||||||||||||    
T  14811379 aaaaataaatattaattgtccgatatttctccgatacacgtatcgggacgtatccgacacgtatcggtcattgtttttcaaaaaaataaatattaattgc 14811280  T
Q  432 ccgatacttttccgatacccgtatcgg 458  Q
    |||||||||||||||||| ||||||||    
T  14811279 ccgatacttttccgatacgcgtatcgg 14811253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 33 - 375
Target Start/End: Original strand, 14314062 - 14314410
Alignment:
Q  33 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  14314062 gaacatttttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacagca-aagaaacataacattagagagaagagaaacaaag 14314160  T
Q  133 tagaattcaatcagtggtaatggttagaagagagaata-------gctattgctatgtggtgacgagaaaccatatatttttaggttagaagagacaata 225  Q
    |||||||||||||  |||||||||||||||||||||||       ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  14314161 tagaattcaatcaccggtaatggttagaagagagaataactattggctattgctatgtggtgacgagaaaccctatttttttaggttagaagagacaata 14314260  T
Q  226 tgattttgatagtgctgccagacttgataagtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtcannnnnnn 325  Q
    |||||||||||| || ||||||||||||| |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||           
T  14314261 tgattttgatagcgcagccagacttgataggtgttggagtataagtaagctgtgtcggagtgcaagttagtcgtatccgacacgtatcggtcattttttt 14314360  T
Q  326 ccttcaaaaaataaatattaactgtccgatacttctccgatacgcgtatc 375  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||    
T  14314361 ccttcaaaaaataaatattaattgcccgatacttctccgatacgcgtatc 14314410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 139 - 243
Target Start/End: Complemental strand, 29081213 - 29081109
Alignment:
Q  139 tcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccatatatttttaggttagaagagacaatatgattttgatagt 238  Q
    |||||| ||||||||||||||||||| ||||| ||||||||  ||||||||||| |||| ||| || |  | ||||||||||||||||| |||| ||||     
T  29081213 tcaatcggtggtaatggttagaagagggaataactattgctcggtggtgacgaggaaccctattttctgggattagaagagacaatatgtttttcatagc 29081114  T
Q  239 gctgc 243  Q
    |||||    
T  29081113 gctgc 29081109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 331 - 385
Target Start/End: Original strand, 14314437 - 14314491
Alignment:
Q  331 aaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 385  Q
    |||||||||||||||| || ||||||||| |||||||||||||||||||||||||    
T  14314437 aaaaaataaatattaattgcccgatacttttccgatacgcgtatcgggacgtatc 14314491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 331 - 385
Target Start/End: Complemental strand, 14811299 - 14811245
Alignment:
Q  331 aaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 385  Q
    |||||||||||||||| || ||||||||| |||||||||||||||||||||||||    
T  14811299 aaaaaataaatattaattgcccgatacttttccgatacgcgtatcgggacgtatc 14811245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 13043622 - 13043666
Alignment:
Q  96 cagaagaaacataacattagagagaagagaaacagagtagaattc 140  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  13043622 cagaagaaacataacattagagagaagagaaacatagtagaattc 13043666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 458
Target Start/End: Original strand, 14314445 - 14314483
Alignment:
Q  420 aatattaattgcccgatacttttccgatacccgtatcgg 458  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  14314445 aatattaattgcccgatacttttccgatacgcgtatcgg 14314483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 456
Target Start/End: Original strand, 14314374 - 14314410
Alignment:
Q  420 aatattaattgcccgatacttttccgatacccgtatc 456  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  14314374 aatattaattgcccgatacttctccgatacgcgtatc 14314410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 33 - 404
Target Start/End: Complemental strand, 54260528 - 54260168
Alignment:
Q  33 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54260528 gaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 54260429  T
Q  133 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccatatatttttaggttagaagagacaatatgatttt 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||    
T  54260428 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaacctatttttttaggttagaagagacaatatgatttt 54260329  T
Q  233 gatagtgctgccagacttgataagtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtcannnnnnnccttcaa 332  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       |||||||    
T  54260328 gatagcgctgccagacttgataggtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcggtcatttttttccttcaa 54260229  T
Q  333 aaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattg 404  Q
    ||||||||||||||           || ||||||||||||||||||||||||||||||||||||||||||||    
T  54260228 aaaataaatattaa-----------ttgtccgatacgcgtatcgggacgtatccgacacgtatcggtcattg 54260168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 26261323 - 26261246
Alignment:
Q  146 gtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccatatatttttaggttagaagagacaat 224  Q
    ||||||||||||||||||| |||||||||| |||  |||||||||||||||  ||| ||||  ||||||||||||||||    
T  26261323 gtggtaatggttagaagagggaatagctatagctcggtggtgacgagaaactctat-ttttggggttagaagagacaat 26261246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 378
Target Start/End: Complemental strand, 26261100 - 26261054
Alignment:
Q  332 aaaaataaatattaactgtccgatacttctccgatacgcgtatcggg 378  Q
    ||||||||||||||| || ||||||||||||||||| ||||||||||    
T  26261100 aaaaataaatattaattgcccgatacttctccgatatgcgtatcggg 26261054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 420 - 454
Target Start/End: Complemental strand, 54260151 - 54260117
Alignment:
Q  420 aatattaattgcccgatacttttccgatacccgta 454  Q
    ||||||||||||||||||||||||| |||||||||    
T  54260151 aatattaattgcccgatacttttcccatacccgta 54260117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 26261424 - 26261383
Alignment:
Q  96 cagaagaaacataacattagagagaagagaaacagagtagaa 137  Q
    ||||||||||||| |||||||||||||||||| |||| ||||    
T  26261424 cagaagaaacatagcattagagagaagagaaagagagcagaa 26261383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 33 - 396
Target Start/End: Complemental strand, 8871647 - 8871283
Alignment:
Q  33 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  8871647 gaacatttttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacatag 8871548  T
Q  133 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccatatatttttaggttagaagagacaatatgatttt 232  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  8871547 tagaattcaattagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatttttttaggttagaagagacaatatgatttt 8871448  T
Q  233 gatagtgctgccagacttgataagtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtca-nnnnnnnccttca 331  Q
    ||||| |||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||        ||||||    
T  8871447 gatagcgctgccagacttgataggtgtcggagtataactaagatgtgtcggagtacaagttagtcgtatccgacacgtatcggtcattttttttccttca 8871348  T
Q  332 aaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatc 396  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||  ||||||||||||    
T  8871347 aaaaataaatattaattgtccgatacttctctgatacgcgtatcgggacgtgcccgacacgtatc 8871283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 33 - 318
Target Start/End: Original strand, 13854368 - 13854653
Alignment:
Q  33 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  13854368 gaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaa-caaatagcagaagaaacataacattagagagaagagaaacagag 13854466  T
Q  133 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccatatatttt-taggttagaagagacaatatgattt 231  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||| |||| |||||||| ||||||||||||||||    
T  13854467 tagaattcaatcagtggtaatggttagaagagataatagttattgctatgtggtgacgagaaaccctattttttttaggttaggagagacaatatgattt 13854566  T
Q  232 tgatagtgctgccagacttgataagtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtca 318  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13854567 tgatagcgctgccagacttgataggtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtca 13854653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 131 - 404
Target Start/End: Complemental strand, 36606480 - 36606208
Alignment:
Q  131 agtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccatatatttttaggttagaagagacaatatgatt 230  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  36606480 agtagaattcaatcagtgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatttttttaggttagaagagacaatatgatt 36606381  T
Q  231 ttgatagtgctgccagacttgataagtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtcannnnnnnccttc 330  Q
    ||||||| |||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||       ||||     
T  36606380 ttgatagcgctgccagacttgataggtgtcagagtataagtaagctgtgtcggagtacaagttagtcgtatccgacacgtgtcggtca-ttttttcctta 36606282  T
Q  331 aaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattg 404  Q
    |||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  36606281 aaaaaataaatattaattgtccgatacttctccgacacgcatatcgggacgtatccgacacgtatcggtcattg 36606208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 99 - 251
Target Start/End: Complemental strand, 6666009 - 6665857
Alignment:
Q  99 aagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaacca 198  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||  ||||||||||||||||||| |||||| ||| |||||||||||||||||||||     
T  6666009 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccc 6665910  T
Q  199 tatatttttaggttagaagagacaatatgattttgatagtgctgccagacttg 251  Q
    ||| ||||| ||||||||||||||||||| ||||||||| |||||||||||||    
T  6665909 tatttttttgggttagaagagacaatatgtttttgatagcgctgccagacttg 6665857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 96 - 251
Target Start/End: Complemental strand, 32659224 - 32659069
Alignment:
Q  96 cagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaa 195  Q
    |||||||||||||||||||||| || |||||||  |||||||||||||||   ||||||| |||||||  |||||||||| |||||||||||||||||||    
T  32659224 cagaagaaacataacattagagggaggagaaacttagtagaattcaatcataagtaatgggtagaagatggaatagctatcgctatgtggtgacgagaaa 32659125  T
Q  196 ccatatatttttaggttagaagagacaatatgattttgatagtgctgccagacttg 251  Q
    || ||||||||  ||||||||||||||||||| ||||||||| | |||||||||||    
T  32659124 ccctatattttggggttagaagagacaatatgtttttgatagcgttgccagacttg 32659069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 36606541 - 36606474
Alignment:
Q  33 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaa 100  Q
    |||||||||| |||||||||||||||||||||||||  ||||||||||||  ||||||||||| ||||    
T  36606541 gaacatctttgtctaatgttgactacttaacagttaatactaatttatattaaaaacaaacagtagaa 36606474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 6666094 - 6666038
Alignment:
Q  39 ctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacag 95  Q
    |||| ||||||||||||||||||  ||||| ||||||||||||||||||||||||||    
T  6666094 ctttgtctaatgttgactacttactagttaacactaatttatatcgaaaacaaacag 6666038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 277 - 385
Target Start/End: Complemental strand, 6665796 - 6665692
Alignment:
Q  277 gtgtcggagtacaagttagtcgtatccgacacgtatcagtcannnnnnnccttcaaaaaataaatattaactgtccgatacttctccgatacgcgtatcg 376  Q
    ||||||||||| ||||||| ||||||||||||||||| || |         ||||||||| ||||||||| ||  ||||||||||||||||||||||| |    
T  6665796 gtgtcggagtataagttagccgtatccgacacgtatcggtaatttttt---ttcaaaaaa-aaatattaattgctcgatacttctccgatacgcgtattg 6665701  T
Q  377 ggacgtatc 385  Q
    |||||||||    
T  6665700 ggacgtatc 6665692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 30131347 - 30131399
Alignment:
Q  182 gtggtgacgagaaaccatatatttttaggttagaagagacaatatgattttgat 235  Q
    |||||||||||||||| ||| ||||||||||||||||| ||||||| |||||||    
T  30131347 gtggtgacgagaaaccctat-tttttaggttagaagaggcaatatgtttttgat 30131399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 32659313 - 32659267
Alignment:
Q  33 gaacatctttatctaatgttgactacttaacagttatcactaattta 79  Q
    ||||| |||| ||||||||||||||||||| ||||| ||||||||||    
T  32659313 gaacacctttgtctaatgttgactacttaatagttaacactaattta 32659267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 30131211 - 30131252
Alignment:
Q  96 cagaagaaacataacattagagagaagagaaacagagtagaa 137  Q
    ||||||||||||| |||||||||||||||||| | |||||||    
T  30131211 cagaagaaacatagcattagagagaagagaaataaagtagaa 30131252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 33 - 458
Target Start/End: Complemental strand, 29054966 - 29054539
Alignment:
Q  33 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29054966 gaacatctttgtctaatgttgactacttaaccgttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacatag 29054867  T
Q  133 tagaattcaatcagtggtaatggttagaagagagaatagcta--ttgctatgtggtgacgagaaaccatatatttttaggttagaagagacaatatgatt 230  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  29054866 tagaattcaatcagtggtaatggttagaagagagaatagctattttgctatgtggtgacgagaaaccctat-tttttaggttagaagagacaatatgatt 29054768  T
Q  231 ttgatagtgctgccagacttgataagtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtca-nnnnnnncctt 329  Q
    ||||||  ||||||| |||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||        ||||    
T  29054767 ttgataacgctgccaaacttgataggtgttggagtataagtaagctgtgtcggagtacaagttagtcgtatccgacacgtataggtcattttttttcctt 29054668  T
Q  330 caaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgnnnnnnnnnnnnnntaatattaatt 429  Q
    ||| |||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||| |||||||               ||||||||||    
T  29054667 caataaataaatattaactgtctgatacttcaccaatacgcgtatcgggacgtatccgacacgtatcagtcattgtttttcaaaaaaataaatattaatt 29054568  T
Q  430 gcccgatacttttccgatacccgtatcgg 458  Q
    |||||||||||||||||||||||||||||    
T  29054567 gcccgatacttttccgatacccgtatcgg 29054539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 33 - 377
Target Start/End: Complemental strand, 21076373 - 21076028
Alignment:
Q  33 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||||||| ||||||||| | |||||||| |||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  21076373 gaacatctttgtctaatgttaattacttaacggttaacactaatttatatcgaaaacaaacaacataagaaacataacattagagagaagagaaacagag 21076274  T
Q  133 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccatatatttttaggttagaagagacaatatgatttt 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||    
T  21076273 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatttttttaggttagaaaagacaatatgatttt 21076174  T
Q  233 gatagtgctgccagacttgataagtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtca-nnnnnnnccttca 331  Q
    ||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||        ||||||    
T  21076173 gatagcgctgccagacttgataggtgtcggagtataagtaagctgtgtcggagtacaagttagtcgtatccgacacgtatcggtcattttttttccttca 21076074  T
Q  332 aaaaataaatattaactgtccgatacttctccgatacgcgtatcgg 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  21076073 aaaaataaatattaactgtccgatacttctccgatacgcgtatcgg 21076028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 33 - 377
Target Start/End: Complemental strand, 20289743 - 20289398
Alignment:
Q  33 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||||||| ||||||||| | |||||||| |||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  20289743 gaacatctttgtctaatgttaattacttaacggttaacactaatttatatcgaaaacaaacaacataagaaacataacattagagagaagagaaacagag 20289644  T
Q  133 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccatatatttttaggttagaagagacaatatgatttt 232  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||    
T  20289643 tagaattcaattagtgttaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatttttttaggttagaaaagacaatatgatttt 20289544  T
Q  233 gatagtgctgccagacttgataagtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtca-nnnnnnnccttca 331  Q
    ||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||        ||||||    
T  20289543 gatagcgctgccagacttgataggtgtcggagtataagtaagctgtgtcggagtacaagttagtcgtatccgacacgtatcggtcattttttttccttca 20289444  T
Q  332 aaaaataaatattaactgtccgatacttctccgatacgcgtatcgg 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  20289443 aaaaataaatattaactgtccgatacttctccgatacgcgtatcgg 20289398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 33 - 458
Target Start/End: Original strand, 17630837 - 17631252
Alignment:
Q  33 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  17630837 gaacatatttgtctaatgttgactacttaacagttaacactaatttatatcgaaaactaacagcagaataaacataacattagagagaagagaaacagag 17630936  T
Q  133 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccatatatttttaggttagaagagacaatatgatttt 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  17630937 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatttggtgacgagaaaccctatttttttaggttagaagagacaatatgatttt 17631036  T
Q  233 gatagtgctgccagacttgataagtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtca-nnnnnnnccttca 331  Q
    ||||| | |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||        ||||||    
T  17631037 gatagcgttgccagacttgataggtgtcggagtataagtaagctgtgtcggagtacaagttagtcgtatccgacacgtatcggtcattttttttccttca 17631136  T
Q  332 aaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgnnnnnnnnnnnnnntaatattaattgc 431  Q
    ||||||||||||||||||           |||||||| |||||||||||||||| ||||||||||||||||||               ||||||||||||    
T  17631137 aaaaataaatattaactg-----------tccgatacacgtatcgggacgtatctgacacgtatcggtcattgtttttcaaaaaaataaatattaattgc 17631225  T
Q  432 ccgatacttttccgatacccgtatcgg 458  Q
    | |||||||||||||||||||||||||    
T  17631226 ctgatacttttccgatacccgtatcgg 17631252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 33 - 458
Target Start/End: Complemental strand, 17068578 - 17068173
Alignment:
Q  33 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17068578 gaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 17068479  T
Q  133 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccatatatttttaggttagaagagacaatatgatttt 232  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||    
T  17068478 taaaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatttttttaggttagaagagataatatgatttt 17068379  T
Q  233 gatagtgctgccagacttgataagtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtca-nnnnnnnccttca 331  Q
    ||||| ||||| |||||||||| |||||||||                     ||||||||||||| |||||||||||||| ||||        ||||||    
T  17068378 gatagcgctgcgagacttgataggtgtcggag---------------------tacaagttagtcgcatccgacacgtatcggtcattttttttccttca 17068300  T
Q  332 aaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgnnnnnnnnnnnnnntaatattaattgc 431  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||    
T  17068299 aaaaataaatattaactgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaaaaaataaatattaattgc 17068200  T
Q  432 ccgatacttttccgatacccgtatcgg 458  Q
    ||||||||||||||||||| |||||||    
T  17068199 ccgatacttttccgatacctgtatcgg 17068173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 33 - 403
Target Start/End: Original strand, 17579695 - 17580045
Alignment:
Q  33 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17579695 gaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 17579794  T
Q  133 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccatatatttttaggttagaagagacaatatgatttt 232  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||    
T  17579795 taaaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatttttttaggttagaagagataatatgatttt 17579894  T
Q  233 gatagtgctgccagacttgataagtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtca-nnnnnnnccttca 331  Q
    ||||| ||||| |||||||||| |||||||||                     ||||||||||||| |||||||||||||| ||||        ||||||    
T  17579895 gatagcgctgcgagacttgataggtgtcggag---------------------tacaagttagtcgcatccgacacgtatcggtcattttttttccttca 17579973  T
Q  332 aaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcatt 403  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17579974 aaaaataaatattaactgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcatt 17580045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 123 - 458
Target Start/End: Original strand, 10861549 - 10861884
Alignment:
Q  123 agaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccatatatttttaggttagaagagaca 222  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  10861549 agaaacatagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatatttttaggttagaagagaga 10861648  T
Q  223 atatgattttgatagtgctgccagacttgataagtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtcannnn 322  Q
    |||||||||||| || |||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||        
T  10861649 atatgattttgagagcgctgccagacctgataggtgtcggagtataagtaagctgtgtcggagtacaagttagtcgtatccgacacgtatcggtcatttt 10861748  T
Q  323 nnnccttcaaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgnnnnnnnnnnnnnntaat 422  Q
       ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||               |||    
T  10861749 tttccttcaaaaaataaatattaattgtccgatacttctccgatacgcgtatcggcacgtatccgacacgtatcggtcattgtttttcaaaaaaataaat 10861848  T
Q  423 attaattgcccgatacttttccgatacccgtatcgg 458  Q
    ||||||||||| ||||||||||||||||||||||||    
T  10861849 attaattgcccaatacttttccgatacccgtatcgg 10861884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 33 - 458
Target Start/End: Original strand, 34964423 - 34964834
Alignment:
Q  33 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  34964423 gaacatctttgtctaatgttgactacttaacagttaacactaatttacatcgaaaacaaacagcagaataaacataacattagagagaagagaaacatag 34964522  T
Q  133 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccatatatttttaggttagaagagacaatatgatttt 232  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||           ||    
T  34964523 tagaattcaatcaaaggtaatggttagaagagagaatagctattgctatgcggtgacgagaaaccctatttttttaggttagaagag-----------tt 34964611  T
Q  233 gatagtgctgccagacttgataagtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtca-nnnnnnnccttca 331  Q
    ||||| ||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||        ||||||    
T  34964612 gatagcgctgccaaacttgataggtgtcggagtataagtaagctgtgtcggagtacaagttagtcgtatccgacacatatcggtcattttttttccttca 34964711  T
Q  332 aaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgnnnnnnnnnnnnnntaatattaattgc 431  Q
    ||||||||||||||||  ||||||||||||||||||||| |||||||    ||||||||||||||||||||||               ||||||||||||    
T  34964712 aaaaataaatattaaccatccgatacttctccgatacgcatatcggg----atccgacacgtatcggtcattgtttttcaaaaaaataaatattaattgc 34964807  T
Q  432 ccgatacttttccgatacccgtatcgg 458  Q
    |||||||||||||||||||||||||||    
T  34964808 ccgatacttttccgatacccgtatcgg 34964834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 99 - 250
Target Start/End: Original strand, 3046537 - 3046688
Alignment:
Q  99 aagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaacca 198  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||  ||||||||||||||||||| |||||| ||| | |||||||||||||||||||     
T  3046537 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgttatgtggtgacgagaaaccc 3046636  T
Q  199 tatatttttaggttagaagagacaatatgattttgatagtgctgccagactt 250  Q
    ||| ||||| ||||||||||||||||||| ||||||||| ||||||| ||||    
T  3046637 tatttttttgggttagaagagacaatatgtttttgatagcgctgccaaactt 3046688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 326 - 458
Target Start/End: Original strand, 17580052 - 17580184
Alignment:
Q  326 ccttcaaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgnnnnnnnnnnnnnntaatatt 425  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||    
T  17580052 ccttcaaaaaataaatattaactgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaaaaaataaatatt 17580151  T
Q  426 aattgcccgatacttttccgatacccgtatcgg 458  Q
    ||||||||||||||||||||||||| |||||||    
T  17580152 aattgcccgatacttttccgatacctgtatcgg 17580184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 10861482 - 10861557
Alignment:
Q  33 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaagaaacata 108  Q
    |||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  10861482 gaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacata 10861557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 256 - 385
Target Start/End: Original strand, 3046757 - 3046884
Alignment:
Q  256 gtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtcannnnnnnccttc-aaaaaataaatattaactgtccga 354  Q
    |||||||||||||| | || ||||||||||||||||||||  ||||| |||||||||| || |         ||| |||||||||||||||| || || |    
T  3046757 gtgtcggagtataaattagctgtgtcggagtacaagttagctgtatcagacacgtatcggtaaattttt---ttcgaaaaaataaatattaattgcccaa 3046853  T
Q  355 tacttctccgatacgcgtatcgggacgtatc 385  Q
    |||||||||||||| ||||||||||||||||    
T  3046854 tacttctccgatacacgtatcgggacgtatc 3046884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 331 - 385
Target Start/End: Complemental strand, 29054585 - 29054531
Alignment:
Q  331 aaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 385  Q
    |||||||||||||||| || ||||||||| |||||||| ||||||||||||||||    
T  29054585 aaaaaataaatattaattgcccgatacttttccgatacccgtatcgggacgtatc 29054531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 3046447 - 3046507
Alignment:
Q  34 aacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaaca 94  Q
    |||| |||| ||||||||||||||||||| | ||| |||||||||||||| ||||||||||    
T  3046447 aacacctttgtctaatgttgactacttaatatttaacactaatttatatcaaaaacaaaca 3046507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 385
Target Start/End: Complemental strand, 17068219 - 17068165
Alignment:
Q  331 aaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 385  Q
    |||||||||||||||| || ||||||||| ||||||||  |||||||||||||||    
T  17068219 aaaaaataaatattaattgcccgatacttttccgatacctgtatcgggacgtatc 17068165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 385
Target Start/End: Original strand, 17580138 - 17580192
Alignment:
Q  331 aaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 385  Q
    |||||||||||||||| || ||||||||| ||||||||  |||||||||||||||    
T  17580138 aaaaaataaatattaattgcccgatacttttccgatacctgtatcgggacgtatc 17580192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 385
Target Start/End: Original strand, 17631206 - 17631260
Alignment:
Q  331 aaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 385  Q
    |||||||||||||||| || | ||||||| |||||||| ||||||||||||||||    
T  17631206 aaaaaataaatattaattgcctgatacttttccgatacccgtatcgggacgtatc 17631260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 385
Target Start/End: Complemental strand, 20289384 - 20289330
Alignment:
Q  331 aaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 385  Q
    |||||||||||||||| || ||||||||| |||||||  ||||||||||||||||    
T  20289384 aaaaaataaatattaattgcccgatacttttccgatagccgtatcgggacgtatc 20289330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 458
Target Start/End: Complemental strand, 20289376 - 20289338
Alignment:
Q  420 aatattaattgcccgatacttttccgatacccgtatcgg 458  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  20289376 aatattaattgcccgatacttttccgatagccgtatcgg 20289338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 385
Target Start/End: Complemental strand, 21076014 - 21075960
Alignment:
Q  331 aaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 385  Q
    |||||||||||||||| || ||||||||| |||||||  ||||||||||||||||    
T  21076014 aaaaaataaatattaattgcccgatacttttccgatagccgtatcgggacgtatc 21075960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 458
Target Start/End: Complemental strand, 21076006 - 21075968
Alignment:
Q  420 aatattaattgcccgatacttttccgatacccgtatcgg 458  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  21076006 aatattaattgcccgatacttttccgatagccgtatcgg 21075968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 385
Target Start/End: Original strand, 34964788 - 34964842
Alignment:
Q  331 aaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 385  Q
    |||||||||||||||| || ||||||||| |||||||| |||||||| |||||||    
T  34964788 aaaaaataaatattaattgcccgatacttttccgatacccgtatcggaacgtatc 34964842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 223; Significance: 1e-122; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 36 - 458
Target Start/End: Original strand, 46397774 - 46398193
Alignment:
Q  36 catctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagagtag 135  Q
    ||||||| ||||||||||| ||||||| ||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||    
T  46397774 catctttgtctaatgttgattacttaatagttaacaataatttatatcgaaaacaaacaacagaagaaacataacattagagagaagagaaacag--tag 46397871  T
Q  136 aattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccatatatttttaggttagaagagacaatatgattttgat 235  Q
    ||||||||| ||||||||| || |||||||||||| || ||| ||||||||||||||||||| ||| |||||||||||||| ||||  ||||||||||||    
T  46397872 aattcaatcggtggtaatgattggaagagagaataactgttgatatgtggtgacgagaaaccctatttttttaggttagaaaagac--tatgattttgat 46397969  T
Q  236 agtgctgccagacttgataagtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtcannnnnnnc-cttcaaaa 334  Q
    || |||| ||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||         ||||||||    
T  46397970 agcgctgtcagacttgataggtgtcggagtataagtaagctgtgtgggagtacaagttagtcgtatccgacacgtatcggtcatttttttttcttcaaaa 46398069  T
Q  335 aataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgnnnnnnnnnnnnnntaatattaattgcccg 434  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||               |||||||||||||||    
T  46398070 aataaatattaattgtccgatacttctccgatacgtgtatcgggacgtatccgacacgtatcggtcattgtttttcaaaaaaataaatattaattgcccg 46398169  T
Q  435 atacttttccgatacccgtatcgg 458  Q
    | ||||||| ||||||||||||||    
T  46398170 acacttttctgatacccgtatcgg 46398193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 96 - 250
Target Start/End: Complemental strand, 33369114 - 33368964
Alignment:
Q  96 cagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaa 195  Q
    ||||||||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  33369114 cagaagaaacatagcattagagaga---gaaacagagtagaattcaatcagtggtaatggttagaagagggaatagctatcgctatgtggtgacgagaaa 33369018  T
Q  196 ccatatatttttaggttagaagagacaatatgattttgatagtgctgccagactt 250  Q
    ||  || ||||| |||||||||||| |||||| ||||||||| | |||| |||||    
T  33369017 cccaat-tttttgggttagaagagataatatgtttttgatagcggtgccggactt 33368964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 256 - 375
Target Start/End: Complemental strand, 33368895 - 33368779
Alignment:
Q  256 gtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtcannnnnnnccttcaaaaaataaatattaactgtccgat 355  Q
    ||||| |||||||||| ||| |||| |||||||||||||| |||||| |||||||||| ||||       |    |||||||||||||||| || | |||    
T  33368895 gtgtcagagtataagttagtcgtgttggagtacaagttagccgtatctgacacgtatcggtcattattttc---aaaaaaataaatattaattgcctgat 33368799  T
Q  356 acttctccgatacgcgtatc 375  Q
    ||||||||||||||||||||    
T  33368798 acttctccgatacgcgtatc 33368779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 385
Target Start/End: Original strand, 23206235 - 23206363
Alignment:
Q  256 gtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtcannnnnnnccttcaaaaaataaatattaactgtccgat 355  Q
    |||||||||||||||| || ||| |||||||| |||||||  ||||| ||||  ||||  |||        |||||||||||||||||||| |||  |||    
T  23206235 gtgtcggagtataagttaggtgtatcggagtataagttagctgtatctgacatatatcgatcactttttttcttcaaaaaataaatattaattgtt-gat 23206333  T
Q  356 acttctccgatacgcgtatcgggacgtatc 385  Q
    |||||||| ||||| |||||||||| ||||    
T  23206334 acttctccaatacgtgtatcgggacatatc 23206363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 385
Target Start/End: Complemental strand, 29096273 - 29096227
Alignment:
Q  339 aatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 385  Q
    |||||||| || |||||||||||||||||||| |||||| |||||||    
T  29096273 aatattaattggccgatacttctccgatacgcatatcggaacgtatc 29096227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 385
Target Start/End: Original strand, 14400 - 14442
Alignment:
Q  343 ttaactgtccgatacttctccgatacgcgtatcgggacgtatc 385  Q
    ||||||| |||||||||||||||||||||||||||| ||||||    
T  14400 ttaactgcccgatacttctccgatacgcgtatcggggcgtatc 14442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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