View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3327_low_9 (Length: 465)
Name: NF3327_low_9
Description: NF3327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3327_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 17 - 450
Target Start/End: Complemental strand, 33383741 - 33383308
Alignment:
| Q |
17 |
taccctacacaattaagaatttcaatgttgtgagttaatgataagggctaggtgagaatttatccaagttcctgaaaaataaagagagagtaacaataat |
116 |
Q |
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| T |
33383741 |
taccctacacaattaagaatttcaatgttgtaagttaatgataagggctaggtgagaatttatccaagttcctgaaaaataaagagagagtaacaataat |
33383642 |
T |
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| Q |
117 |
ggtggaccaacattaatgcttccatcactacttgaggcaaatgatgatggtttggacagttgtgatatacttgaattaactatttgtttttagctaaaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33383641 |
ggtggaccaacattaatgcttccatcactacttgaggcaaatgatgatggtttgcacagttgtgatatacttgaattaactatttgtttttagctcaaat |
33383542 |
T |
|
| Q |
217 |
cactgaaattattgagataacaaagcaacttcataacagaagatacacacaacatatatatgcatagaaataacattgttgtgtggtatttcaatgccta |
316 |
Q |
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| T |
33383541 |
cactgaaattattgagataacaaatcaacttcataacagaagatacacacaatatatatatgcatagaaataacattgttgtgtggtatttcaatgccta |
33383442 |
T |
|
| Q |
317 |
agcaaacccaactcctctattaaagcactcaaatctgagtaagatgatccttcttcttccacagacctcttagctaactttgacaacaatttcactcttt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383441 |
agcaaacccaactcctctattaaagcactcaaatctgagtaagatgatccttcttcttccacagacctcttagctaactttgacaacaatttcactcttt |
33383342 |
T |
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| Q |
417 |
tcctcatttcctctacttcttcatcttccataat |
450 |
Q |
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| T |
33383341 |
tcctcatttcctctacttcttcatcttccataat |
33383308 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 380
Target Start/End: Original strand, 27688392 - 27688444
Alignment:
| Q |
328 |
ctcctctattaaagcactcaaatctgagtaagatgatccttcttcttccacag |
380 |
Q |
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|||||| ||||| ||| |||| | ||||||||||||||| ||||||||||||| |
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| T |
27688392 |
ctcctcaattaaggcattcaactgtgagtaagatgatccatcttcttccacag |
27688444 |
T |
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