View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3328_high_1 (Length: 519)
Name: NF3328_high_1
Description: NF3328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3328_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 279
Target Start/End: Original strand, 38504513 - 38504770
Alignment:
| Q |
15 |
cacaagtaaacaacaacttcgaaataccaaactcccaaaccactatttccatgatataccatcaataattccacatggaggatgttggagaatcctatat |
114 |
Q |
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| T |
38504513 |
cacaagtacacagcaactccgaaataccaaactcccaggccactatttccatgatata-------taattccacatggaggatgttggagaatcctatat |
38504605 |
T |
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| Q |
115 |
tacccacaaactcatggaaccaagcatcatcagaatttcgaatcaattccccaaagcttgaaatattagggttatcgaggctacttccatcaacattcaa |
214 |
Q |
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| T |
38504606 |
tacccacaaactcatggaaccaagcaccatcagaatttcgaatcaattccccaaagtttgaaatactagggttatcgaggctactcccatcaacattcaa |
38504705 |
T |
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| Q |
215 |
gatcatttcaataccactatgatcgttctatcaaatcacttaaaatcatttgattcacttttatg |
279 |
Q |
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| T |
38504706 |
gatcatttcaataccatcatgatcgttccatcaaatcatttaaaatcatttgattcacttttatg |
38504770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 386 - 512
Target Start/End: Original strand, 38504877 - 38505008
Alignment:
| Q |
386 |
cggtttaatgatggcgagttgtactatagggaatgattaccccatgctcctcctagttat-----atgatccattccatggtttgtgcaattcttgtccg |
480 |
Q |
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| T |
38504877 |
cggtttaatgatggcgagttgtactatagggaatgattaccccatgctcctcctagttatattatatgatccattccatggtgtgtgcaattcttgtccg |
38504976 |
T |
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| Q |
481 |
tatcttgtcactagctgcattattctcctttg |
512 |
Q |
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| T |
38504977 |
tatcctgtcactagctgcattattctcctttg |
38505008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 63 - 141
Target Start/End: Complemental strand, 25786021 - 25785943
Alignment:
| Q |
63 |
ccatgatataccatcaataattccacatggaggatgttggagaatcctatattacccacaaactcatggaaccaagcat |
141 |
Q |
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| T |
25786021 |
ccatgataaactaccaataatcctacatggaggatgttagaaaagcctatattaccggcaaaatcatggacccaagcat |
25785943 |
T |
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