View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3328_high_12 (Length: 334)

Name: NF3328_high_12
Description: NF3328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3328_high_12
NF3328_high_12
[»] chr1 (18 HSPs)
chr1 (19-177)||(13244450-13244608)
chr1 (19-183)||(13080788-13080952)
chr1 (182-326)||(13244107-13244251)
chr1 (19-184)||(12963797-12963962)
chr1 (19-177)||(13271691-13271849)
chr1 (19-185)||(19279089-19279255)
chr1 (19-180)||(13086212-13086373)
chr1 (26-178)||(13129940-13130092)
chr1 (46-178)||(13094531-13094663)
chr1 (46-178)||(13070104-13070236)
chr1 (46-178)||(13161653-13161785)
chr1 (46-178)||(13204591-13204723)
chr1 (182-251)||(12963575-12963644)
chr1 (19-99)||(30368115-30368195)
chr1 (189-256)||(19278827-19278894)
chr1 (46-178)||(13101132-13101264)
chr1 (46-178)||(13007332-13007464)
chr1 (247-326)||(19278730-19278809)


Alignment Details
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 13244608 - 13244450
Alignment:
Q  19 ccattgcatacaaagaatatatcaactttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccag 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13244608 ccattgcatacaaagaatatatcaactttgtatttggaccaacatgttctccactaggtagtatatcagatttgatagcgcacttgtgctgaaatgccag 13244509  T
Q  119 aggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaa 177  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13244508 aggaggatatagcctcaaggtttcacatatggctccatgaaggtaaacaagcttatcaa 13244450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 13080952 - 13080788
Alignment:
Q  19 ccattgcatacaaagaatatatcaactttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccag 118  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||| ||| |||| ||||||||||||||||||||||||||||| |     
T  13080952 ccattgcatacaaagaatatattaactttgtatttggactaacatggtctccactaggaagtttatccgatttgatagcacacttgtgctgaaatgctac 13080853  T
Q  119 aggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaagctctt 183  Q
    || |||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  13080852 agaaggatatagccttaaggcttcacatatggctccatgaaggtaaactagcttatcaagctctt 13080788  T

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Target: chr1; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 182 - 326
Target Start/End: Complemental strand, 13244251 - 13244107
Alignment:
Q  182 tttccctctttcccaatccttctttcattagttcttttagcaggcaataacgagattcatctacatcttcatttcctttgtactcagttatacatttgtc 281  Q
    |||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  13244251 tttccccctttcccaatctttccttcattagttcttttagcaggcaataacgagattcatctacatcttcatttcctttgtaatcagttatacatttctc 13244152  T
Q  282 caagaagtggtgaagattttcttttgctgccttgcccttcatctc 326  Q
    |||||| ||||||||||||||| | ||||||||||||||| ||||    
T  13244151 caagaattggtgaagattttctctagctgccttgcccttcttctc 13244107  T

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Target: chr1; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 12963962 - 12963797
Alignment:
Q  19 ccattgcatacaaagaatatatcaactttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccag 118  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| ||||| || ||||||||||| | |||||  |     
T  12963962 ccattgcatacaaagaatatatcaactttgtatttggactaacatggtctccactaggtaatatatctgatttaattgcacacttgtgttcaaatggtat 12963863  T
Q  119 aggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaagctcttt 184  Q
    ||||||| | |||||||| | |||||| || ||||||||||| |||||||||||||||||| ||||    
T  12963862 aggaggataaagccttaaagcttcacaaatagctccatgaagataaacaagcttatcaagcccttt 12963797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 13271691 - 13271849
Alignment:
Q  19 ccattgcatacaaagaatatatcaactttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccag 118  Q
    |||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| || |  ||||||||||| | |||||  |     
T  13271691 ccattgcatacaaagagtatattaactttgtgtttggaccaacatggtgtccactaggtagtatatcagaattaactgcacacttgtgatcaaatggtat 13271790  T
Q  119 aggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaa 177  Q
    ||||||| | || || |||||||||||||| ||| ||||||||||||  ||||||||||    
T  13271791 aggaggataaagtctcaaggtttcacatatagctgcatgaaggtaaatcagcttatcaa 13271849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 19279255 - 19279089
Alignment:
Q  19 ccattgcatacaaagaatatatcaactttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccag 118  Q
    |||||||||||||||| ||||| |||||||||||| ||| |||||||| |||||||||||||||||| || || |  ||||||||||| | |||||  |     
T  19279255 ccattgcatacaaagagtatattaactttgtatttagactaacatggtctccactaggtagtatatcggaattaactgcacacttgtgttcaaatggtac 19279156  T
Q  119 aggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaagctctttc 185  Q
    ||| ||| | |||||||||| ||||||||| ||||||||||| ||||| ||||||||||||||||||    
T  19279155 aggtggataaagccttaaggcttcacatatagctccatgaagataaactagcttatcaagctctttc 19279089  T

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Target: chr1; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 13086212 - 13086373
Alignment:
Q  19 ccattgcatacaaagaatatatcaactttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccag 118  Q
    |||||||||||||||| ||||| ||||| ||||||||   |||||  | |||||||||||||||||||| |||||| |||||||||||||||||||  |     
T  13086212 ccattgcatacaaagagtatattaacttagtatttggtttaacataatctccactaggtagtatatcagctttgattgcacacttgtgctgaaatggtac 13086311  T
Q  119 aggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaagct 180  Q
    ||||||| | ||||| || | ||||||||| |||||||||||||| || || |||| |||||    
T  13086312 aggaggataaagcctcaatgcttcacatatagctccatgaaggtacactagtttattaagct 13086373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 178
Target Start/End: Original strand, 13129940 - 13130092
Alignment:
Q  26 atacaaagaatatatcaactttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggagga 125  Q
    ||||||||| || |||||  |||||||||||| |||||||| ||||||||||||||||||||||||||| | |||  | |||| ||| |  | |||||||    
T  13129940 atacaaagagtaaatcaaagttgtatttggactaacatggtatccactaggtagtatatcagatttgattgaacagatatgctcaaaaggtataggagga 13130039  T
Q  126 aatagccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaag 178  Q
     | |||||||||||||||||||| |||||||| ||||| || |||||||||||    
T  13130040 taaagccttaaggtttcacatatagctccatggaggtatactagcttatcaag 13130092  T

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Target: chr1; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 46 - 178
Target Start/End: Original strand, 13094531 - 13094663
Alignment:
Q  46 ttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcaca 145  Q
    |||||||||||  |||||||| ||||||||||||||||||||||||||| |||||  | |||| ||| |  | ||||||| | |||||||||||||||||    
T  13094531 ttgtatttggagtaacatggtatccactaggtagtatatcagatttgattgcacagatatgctcaaaaggtacaggaggataaagccttaaggtttcaca 13094630  T
Q  146 tatggctccatgaaggtaaacaagcttatcaag 178  Q
    ||| |||||||| ||||| || |||||||||||    
T  13094631 tatagctccatggaggtatactagcttatcaag 13094663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 178
Target Start/End: Complemental strand, 13070236 - 13070104
Alignment:
Q  46 ttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcaca 145  Q
    |||||||||||| |||| | | |||||||||||||||||| |||||||| |||||  | |||| ||| |  | ||||||| | || || |||||||||||    
T  13070236 ttgtatttggactaacacgctctccactaggtagtatatcggatttgattgcacatatatgctcaaaaggtacaggaggataaagtctcaaggtttcaca 13070137  T
Q  146 tatggctccatgaaggtaaacaagcttatcaag 178  Q
    ||| |||||||||||||| || || ||||||||    
T  13070136 tatagctccatgaaggtacactagattatcaag 13070104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 178
Target Start/End: Original strand, 13161653 - 13161785
Alignment:
Q  46 ttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcaca 145  Q
    |||||||||||| || | | | |||||||||||||||||| |||||||| |||||  | |||| ||| |  | ||| ||| | |||||||||||||||||    
T  13161653 ttgtatttggactaatacgttctccactaggtagtatatcggatttgattgcacagatatgctcaaaaggtataggtggataaagccttaaggtttcaca 13161752  T
Q  146 tatggctccatgaaggtaaacaagcttatcaag 178  Q
    ||| |||||||| ||||| || |||||||||||    
T  13161753 tatagctccatggaggtatactagcttatcaag 13161785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 178
Target Start/End: Original strand, 13204591 - 13204723
Alignment:
Q  46 ttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcaca 145  Q
    |||||||||||| |||| | | |||||||||||||||||| |||||||| |||||  | |||| ||| |  | ||||||| | || || |||| ||||||    
T  13204591 ttgtatttggactaacacgctctccactaggtagtatatcggatttgattgcacatatatgctcaaaaggtacaggaggataaagtctcaaggcttcaca 13204690  T
Q  146 tatggctccatgaaggtaaacaagcttatcaag 178  Q
    ||| |||||||||||||| || |||||||||||    
T  13204691 tatagctccatgaaggtacactagcttatcaag 13204723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 12963644 - 12963575
Alignment:
Q  182 tttccctctttcccaatccttctttcattagttcttttagcaggcaataacgagattcatctacatcttc 251  Q
    |||||| ||||||||||||||| |||||||| ||||||||||||||| || |||||||||| || |||||    
T  12963644 tttccccctttcccaatccttccttcattagatcttttagcaggcaagaatgagattcatccacgtcttc 12963575  T

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Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 30368195 - 30368115
Alignment:
Q  19 ccattgcatacaaagaatatatcaactttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcac 99  Q
    |||| ||||||||||| || || ||||| |||||||||| |||||  | ||||||||||||||||||||||||||| ||||    
T  30368195 ccatagcatacaaagagtaaattaacttggtatttggactaacattctctccactaggtagtatatcagatttgattgcac 30368115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 19278894 - 19278827
Alignment:
Q  189 ctttcccaatccttctttcattagttcttttagcaggcaataacgagattcatctacatcttcatttc 256  Q
    ||||||||||| ||| |||||||||||||||| |||||||||| ||||||||||  | ||||||||||    
T  19278894 ctttcccaatctttccttcattagttcttttaccaggcaataatgagattcatccgcgtcttcatttc 19278827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 46 - 178
Target Start/End: Original strand, 13101132 - 13101264
Alignment:
Q  46 ttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcaca 145  Q
    |||||||||||| || | | | ||||||||| |||||||| |||||||| | |||  | |||| ||| |  | ||||||| | ||||| |||||||||||    
T  13101132 ttgtatttggactaaaacgctctccactaggaagtatatcggatttgattgaacatatatgctcaaaaggtacaggaggataaagcctcaaggtttcaca 13101231  T
Q  146 tatggctccatgaaggtaaacaagcttatcaag 178  Q
    ||| |||||||| ||||| || |||||||||||    
T  13101232 tatagctccatggaggtacactagcttatcaag 13101264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 178
Target Start/End: Original strand, 13007332 - 13007464
Alignment:
Q  46 ttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcaca 145  Q
    |||||||||||| |||| | | |||||||||||||||||| || ||||| |||||  | |||| ||| |  | ||||||| | ||||| | || ||||||    
T  13007332 ttgtatttggactaacacgctctccactaggtagtatatcggaattgattgcacagatatgctcaaaaggtacaggaggataaagcctcatggcttcaca 13007431  T
Q  146 tatggctccatgaaggtaaacaagcttatcaag 178  Q
    ||  |||||||| ||||| || |||||||||||    
T  13007432 tagagctccatggaggtacactagcttatcaag 13007464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 326
Target Start/End: Complemental strand, 19278809 - 19278730
Alignment:
Q  247 tcttcatttcctttgtactcagttatacatttgtccaagaagtggtgaagattttcttttgctgccttgcccttcatctc 326  Q
    |||||||  |||||||| | || ||||||||||| |||||| | ||||||||||||||| ||| || |||||||| ||||    
T  19278809 tcttcatcacctttgtaataagatatacatttgttcaagaattcgtgaagattttctttagctaccgtgcccttcttctc 19278730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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