View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3328_high_18 (Length: 250)
Name: NF3328_high_18
Description: NF3328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3328_high_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 24 - 240
Target Start/End: Original strand, 33389412 - 33389628
Alignment:
| Q |
24 |
tggttatccttcaaaacctgcaaaaaatcttgtttctggtgccaaactggaagggttttcctcttctccaatatttcatagtacctttgtgagtaaggtt |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33389412 |
tggttatccttcaaaacctgcaaaaaatcttgtttctggtgccaaactggaagggttttcctcttctccaatatttcatagtacctttgtgagtaaggtt |
33389511 |
T |
|
| Q |
124 |
ttctgttccaacggttaatgaagttgttgacggttaagccaccgtttgttttcaccatcttggcagtagagtcgtcatcgacgacgtcaaagagactcac |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33389512 |
ttctgttccaacggttaatgaagttgttgacggttaaaccaccgtttgttttcaccatcttggcagtagagtcgtcatcgacgacgtcaacgagactcac |
33389611 |
T |
|
| Q |
224 |
ctttctcttcctctctg |
240 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
33389612 |
ctttctcttcctctctg |
33389628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 38781441 - 38781677
Alignment:
| Q |
1 |
tttcaccaacaagaatcaaaatctggttatccttcaaaacctgcaaaaaatcttgtttctggtgccaaactggaagggttttcctcttctccaatatttc |
100 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||| ||| ||||| | |||||| |||||||| ||||||||||||||||| ||||| || || |
|
|
| T |
38781441 |
tttcaccaacaagaatcaaagtctgattatccttcaaaaccttcaagaaatcctctttctgatgccaaacaggaagggttttcctcttttccaaaatctc |
38781540 |
T |
|
| Q |
101 |
atagtacctttgtgagtaaggttttctgttccaacggttaatgaagttgttgacggttaagccaccgtttgttttcaccatcttggcagtagagtcgtca |
200 |
Q |
| |
|
|| |||||||| ||||||||||||| |||||||||||||||| ||||| | |||| || || || |||||||||||||| || | || |||| |
|
|
| T |
38781541 |
atgatacctttgcgagtaaggttttccattccaacggttaatgagattgttaccaattaaaccgccattagttttcaccatcttagctgcag---cgtcg |
38781637 |
T |
|
| Q |
201 |
tcgacgacgtcaaagagactcacctttctcttcctctctg |
240 |
Q |
| |
|
||||||||||| || | ||||||||| ||||| ||||||| |
|
|
| T |
38781638 |
tcgacgacgtcgaataaactcaccttcctctttctctctg |
38781677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 20814361 - 20814138
Alignment:
| Q |
1 |
tttcaccaacaagaatcaaaatctggttatccttcaaaacctgcaaaaaatcttgtttctggtgccaaactggaagggttttcctcttctccaatatttc |
100 |
Q |
| |
|
|||||||||| || || |||||||| |||||||| |||| |||||||||||| | ||||||||||||||| ||||||||||||||||||||||| || || |
|
|
| T |
20814361 |
tttcaccaacgaggattaaaatctgattatccttaaaaaactgcaaaaaatcatctttctggtgccaaaccggaagggttttcctcttctccaaaatctc |
20814262 |
T |
|
| Q |
101 |
atagtacctttgtgagtaaggttttctgttccaacggttaatgaagttgttgacggttaagccaccgtttgttttcaccatcttggcagtagagtcgtca |
200 |
Q |
| |
|
|||| ||| | ||||||||||||| |||||| || ||||||| || |||| || ||||| ||||||||| |||| |||||||||||| |
|
|
| T |
20814261 |
gaagtaacttggagagtaaggttttccgttccagcg---------gttgttgccgattaaaccgccgttggttttcaccgtcttagcagtagagtcg--- |
20814174 |
T |
|
| Q |
201 |
tcgacgacgtcaaagagactcacctttctcttcctc |
236 |
Q |
| |
|
|||||||| || || | ||||||||||||||||||| |
|
|
| T |
20814173 |
tcgacgacatcgaataaactcacctttctcttcctc |
20814138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University