View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3328_high_2 (Length: 441)

Name: NF3328_high_2
Description: NF3328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3328_high_2
NF3328_high_2
[»] chr8 (11 HSPs)
chr8 (1-369)||(43539752-43540129)
chr8 (189-369)||(43539096-43539276)
chr8 (194-369)||(59548-59723)
chr8 (196-369)||(35675612-35675785)
chr8 (218-367)||(60168-60313)
chr8 (191-323)||(35178802-35178934)
chr8 (389-435)||(43539687-43539733)
chr8 (251-343)||(28524811-28524903)
chr8 (195-343)||(32898423-32898571)
chr8 (336-369)||(35676373-35676406)
chr8 (192-288)||(2552008-2552104)
[»] chr4 (9 HSPs)
chr4 (195-369)||(29980200-29980373)
chr4 (196-369)||(39267720-39267892)
chr4 (197-369)||(29978833-29979007)
chr4 (196-369)||(39268803-39268975)
chr4 (254-343)||(21623095-21623184)
chr4 (245-343)||(21621870-21621968)
chr4 (266-309)||(32244700-32244743)
chr4 (251-307)||(2786274-2786330)
chr4 (279-343)||(24753539-24753603)
[»] chr3 (12 HSPs)
chr3 (194-322)||(26652603-26652731)
chr3 (186-369)||(27823717-27823900)
chr3 (251-346)||(40206912-40207008)
chr3 (190-323)||(17700510-17700643)
chr3 (296-369)||(30270735-30270808)
chr3 (266-339)||(40205950-40206023)
chr3 (195-260)||(47118112-47118177)
chr3 (191-332)||(48572978-48573119)
chr3 (195-323)||(17701917-17702045)
chr3 (196-239)||(20464543-20464586)
chr3 (195-341)||(52318297-52318443)
chr3 (266-302)||(40317838-40317874)
[»] chr7 (13 HSPs)
chr7 (196-369)||(8484158-8484331)
chr7 (186-369)||(8077545-8077731)
chr7 (194-314)||(8075482-8075601)
chr7 (196-343)||(48646047-48646194)
chr7 (192-343)||(35727693-35727843)
chr7 (195-342)||(7258272-7258419)
chr7 (200-239)||(48788754-48788793)
chr7 (200-343)||(44333141-44333282)
chr7 (279-346)||(384934-385001)
chr7 (193-239)||(385693-385739)
chr7 (194-240)||(21062813-21062859)
chr7 (195-239)||(10899155-10899199)
chr7 (252-308)||(24844627-24844683)
[»] chr2 (9 HSPs)
chr2 (195-323)||(32766237-32766365)
chr2 (200-343)||(31091505-31091648)
chr2 (195-308)||(8420010-8420123)
chr2 (193-309)||(12746213-12746329)
chr2 (251-343)||(15441949-15442041)
chr2 (251-339)||(38853808-38853896)
chr2 (198-230)||(5428361-5428393)
chr2 (191-239)||(14705129-14705177)
chr2 (195-343)||(32764935-32765082)
[»] chr5 (11 HSPs)
chr5 (191-308)||(9538062-9538179)
chr5 (191-239)||(24900414-24900462)
chr5 (200-343)||(4592863-4593006)
chr5 (200-307)||(8074453-8074560)
chr5 (200-343)||(19182952-19183095)
chr5 (272-339)||(19271416-19271483)
chr5 (194-236)||(16978988-16979030)
chr5 (200-270)||(28591165-28591235)
chr5 (194-239)||(14891225-14891270)
chr5 (197-290)||(23772809-23772902)
chr5 (251-339)||(26327054-26327142)
[»] chr1 (5 HSPs)
chr1 (254-339)||(50107185-50107270)
chr1 (195-309)||(11060796-11060910)
chr1 (194-343)||(7945532-7945681)
chr1 (251-308)||(1001207-1001264)
chr1 (291-343)||(534517-534569)
[»] chr6 (1 HSPs)
chr6 (196-308)||(12676483-12676595)


Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-159; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 43540129 - 43539752
Alignment:
Q  1 tatttagacattacagacacagatggagtagaggaggtaagttctggtatttgatacaatgcatatttgtcggtcaacatccatttgatataatgacgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||| ||    
T  43540129 tatttagacattacagacacagatggagtagaggaggtaagttctggtatttgatagtatgcatatttgtcagtcaacatccatttgatataatgacata 43540030  T
Q  101 ttcatgggcacctttgtttgtannnnnnncca---------gaaggtattatgtgtttgaagtgtccctacctaaatttgtgttgctctttatgaataat 191  Q
    ||||||||||||||||||||||       |||         ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43540029 ttcatgggcacctttgtttgtatttttttccaacaggttttgaaggtattatgtgtttgatgtgtccctacctaaatttgtgttgctctttatgaataat 43539930  T
Q  192 ttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacat 291  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  43539929 ttttgagtaaatagacactttggtccctgactttgcacctcgctgtcattttagtcccctactcaggataaactacaaaatagtccttgaatatgcacat 43539830  T
Q  292 ctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 369  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43539829 ctgttatcagtttagtccttaccgttaaaaacctatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 43539752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 189 - 369
Target Start/End: Original strand, 43539096 - 43539276
Alignment:
Q  189 aatttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgca 288  Q
    |||| |||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |    
T  43539096 aattattgagtaaatagtcactttggtccctaactttgcacctcgctgtcactttagtccccgactcaggataaactacaaaatagtccctgaatgtgta 43539195  T
Q  289 catctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 369  Q
     |||||||||||||||| ||||||||||||||||| | ||||||||   ||||||||||| ||||||||||||||||||||    
T  43539196 tatctgttatcagtttaatccttaccgttaaaaaattctgttaactaccgatgtgtcaattatagggaccaaattgaaagt 43539276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 194 - 369
Target Start/End: Original strand, 59548 - 59723
Alignment:
Q  194 ttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatct 293  Q
    ||||||||||||||||||| |||| ||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||| | | ||||    
T  59548 ttgagtaaatagtcactttagtccctgactttacacctcgctgtcactttagtccctgactcaggataaactacaaaatagtccctgaatgggtagatct 59647  T
Q  294 gttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 369  Q
    || |||||||||||||||||  |||||||| |||||||||  ||||||||||||||||||||||||||||||||||    
T  59648 gtcatcagtttagtccttacaattaaaaaattatgttaaccgatgatgtgtcaatcatagggaccaaattgaaagt 59723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 196 - 369
Target Start/End: Original strand, 35675612 - 35675785
Alignment:
Q  196 gagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgt 295  Q
    |||| |||||||| ||||||| |||||||||||||||||| ||| |||||||| | ||| |||||||||||||||||| || |||||| || ||||||||    
T  35675612 gagttaatagtcattttggtcgttgactttgcacctcgctatcactttagtcctcaacttaggataaactacaaaatattctttgaatatgtacatctgt 35675711  T
Q  296 tatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 369  Q
    |||||||| | ||||||||||||||||  | |||||| | ||||||||||||| |||| ||||||||| |||||    
T  35675712 tatcagttcaatccttaccgttaaaaatttctgttaattgatgatgtgtcaattatagagaccaaattaaaagt 35675785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 218 - 367
Target Start/End: Complemental strand, 60313 - 60168
Alignment:
Q  218 ttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgtt 317  Q
    |||||||||||||||| ||||| ||| |||||    ||||||||||||||| |||||||| |||||||| | | ||||||||||| ||||| ||||| ||    
T  60313 ttgactttgcacctcgttgtcactttggtccc----tcaggataaactacagaatagtccctgaatgtgtagacctgttatcagtctagtctttaccttt 60218  T
Q  318 aaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaa 367  Q
    |||||  | ||||||||  |||||||||| ||||||||||||||||||||    
T  60217 aaaaatttctgttaactgctgatgtgtcattcatagggaccaaattgaaa 60168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 191 - 323
Target Start/End: Complemental strand, 35178934 - 35178802
Alignment:
Q  191 tttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcaca 290  Q
    |||| ||| |||||||||||||||||| ||||| ||||| |||||||||| || ||||| |||||||||| || ||||||  ||||| ||| | |||||     
T  35178934 ttttcgagcaaatagtcactttggtccctgactctgcacatcgctgtcatattggtccctgactcaggattaaatacaaataagtccctgattctgcact 35178835  T
Q  291 tctgttatcagtttagtccttaccgttaaaaaa 323  Q
    || ||||||| |||||||| |  ||||||||||    
T  35178834 tccgttatcactttagtccctgacgttaaaaaa 35178802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 389 - 435
Target Start/End: Complemental strand, 43539733 - 43539687
Alignment:
Q  389 attaatgataaaaaaccaaataaagaatatttatcaccttcatctct 435  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  43539733 attaatgataaaaaaccaaaaaaagaatatttatcaccttcatctct 43539687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 343
Target Start/End: Original strand, 28524811 - 28524903
Alignment:
Q  251 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 343  Q
    |||||||||| || |||||| || ||||||||||||||| || ||||||| |||||||  |  ||||||| || | |||||||| ||||||||    
T  28524811 gactcaggattaaatacaaagtaatccttgaatgtgcacttccgttatcattttagtctctgacgttaaataattttgttaactgatgatgtg 28524903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 343
Target Start/End: Complemental strand, 32898571 - 32898423
Alignment:
Q  195 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 294  Q
    |||| ||||||||||||| |||| ||||| |||| ||| ||||||  |  ||||| |||| ||||| || ||||||  ||||| ||| | ||||| || |    
T  32898571 tgagcaaatagtcactttagtccctgactctgcaactcactgtcacataggtccctgacttaggattaaatacaaataagtccctgactctgcacttccg 32898472  T
Q  295 ttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 343  Q
    |||||| |||||||| |  |||||||||| | |||||| | ||||||||    
T  32898471 ttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgtg 32898423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 369
Target Start/End: Complemental strand, 35676406 - 35676373
Alignment:
Q  336 atgatgtgtcaatcatagggaccaaattgaaagt 369  Q
    |||||||||||||||||||||| |||||||||||    
T  35676406 atgatgtgtcaatcatagggactaaattgaaagt 35676373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 288
Target Start/End: Original strand, 2552008 - 2552104
Alignment:
Q  192 ttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgca 288  Q
    ||||||||||||  ||| ||||||| ||||||||| || ||||||| ||   ||||   |||||||||| || |||||| || ||||||||||||||    
T  2552008 ttttgagtaaatgatcattttggtctttgactttgtacgtcgctgttatcaaagtctttgactcaggattaaatacaaagtaatccttgaatgtgca 2552104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 195 - 369
Target Start/End: Complemental strand, 29980373 - 29980200
Alignment:
Q  195 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 294  Q
    ||||||||||||||||||| |||| |||||| ||||||||||||| |||||||||| ||||| |||||||||||||||||||| |||||||| | || ||    
T  29980373 tgagtaaatagtcactttgatcct-gactttacacctcgctgtcactttagtccccaactcaagataaactacaaaatagtccctgaatgtgtatatttg 29980275  T
Q  295 ttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 369  Q
    |||||||||||||| |||||||||||||| | ||||| ||  | |||||||||| ||||| |||||  |||||||    
T  29980274 ttatcagtttagtctttaccgttaaaaaattctgttacctacttatgtgtcaattataggaaccaatctgaaagt 29980200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 196 - 369
Target Start/End: Original strand, 39267720 - 39267892
Alignment:
Q  196 gagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgt 295  Q
    ||||||||||||| |||  |||| |||||||||||||||||||| || |||| |||| | |||||||| ||||| | ||| | |||||||| ||||||||    
T  39267720 gagtaaatagtcattttattcct-gactttgcacctcgctgtcacttcagtcgccgattgaggataaaatacaataaagtgcctgaatgtgtacatctgt 39267818  T
Q  296 tatcagtttagtccttaccgttaaaaaacta-tgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 369  Q
    |||||||||||||||||||||| || |||||  ||||| | ||||| ||||||| |||||| |||||||||||||    
T  39267819 tatcagtttagtccttaccgtt-aataactaccgttaaatgatgatatgtcaataataggggccaaattgaaagt 39267892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 197 - 369
Target Start/End: Original strand, 29978833 - 29979007
Alignment:
Q  197 agtaaatagtcactttggtccttgactttgcacctcgctgtcattttagt-ccccgactcaggataaactac-aaaatagtccttgaatgtgcacatctg 294  Q
    |||||||||||| |||||| | ||||||| ||| ||| ||||| |||||| |||||||| | ||| || ||| |||||||||  ||||  |  |||| ||    
T  29978833 agtaaatagtcattttggttcctgactttacacttcgttgtcactttagttccccgacttatgattaaataccaaaatagtctctgaaaatatacatttg 29978932  T
Q  295 ttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 369  Q
    ||||||||||| ||||||||||||||||  | |||||||||| ||||||| ||| | ||||||||||||||||||    
T  29978933 ttatcagtttaatccttaccgttaaaaatttttgttaactcacgatgtgttaattagagggaccaaattgaaagt 29979007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 196 - 369
Target Start/End: Complemental strand, 39268975 - 39268803
Alignment:
Q  196 gagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgt 295  Q
    ||||||||| ||||||| || | ||| ||| || |||||||||| ||||||| ||||||| | ||||| ||||| | ||| | |||| ||| |  |||||    
T  39268975 gagtaaataatcactttagttcctgattttacatctcgctgtcactttagtctccgactctgaataaaatacaataaagttcctgaacgtgtatctctgt 39268876  T
Q  296 tatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 369  Q
    ||||||||||||  ||||||||| |||||| |||||  |  ||||||||||||| || ||||||||||||||||    
T  39268875 tatcagtttagtttttaccgtta-aaaactctgttacatggtgatgtgtcaatcctaaggaccaaattgaaagt 39268803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 254 - 343
Target Start/End: Complemental strand, 21623184 - 21623095
Alignment:
Q  254 tcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 343  Q
    ||||||| || ||||||||||||||||||||||||| |||||||||| ||||||||    ||||||| || |||||||||| ||||||||    
T  21623184 tcaggattaaatacaaaatagtccttgaatgtgcacttctgttatcactttagtccccgacgttaaataattatgttaactaatgatgtg 21623095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 245 - 343
Target Start/End: Original strand, 21621870 - 21621968
Alignment:
Q  245 gtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 343  Q
    ||||| |||||||||| || |||||||||||| |||||||||||| || ||||||| |||||||| |   |||||| || |||||||||| ||||||||    
T  21621870 gtccctgactcaggattaaatacaaaatagtcattgaatgtgcacttccgttatcactttagtccctgatgttaaataattatgttaactgatgatgtg 21621968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 32244743 - 32244700
Alignment:
Q  266 acaaaatagtccttgaatgtgcacatctgttatcagtttagtcc 309  Q
    ||||| ||||||||||||||||||||| ||||||| ||||||||    
T  32244743 acaaagtagtccttgaatgtgcacatccgttatcactttagtcc 32244700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 307
Target Start/End: Original strand, 2786274 - 2786330
Alignment:
Q  251 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagt 307  Q
    |||||||||| || |||||| || ||||||||||||||| || ||||||| ||||||    
T  2786274 gactcaggattaaatacaaattactccttgaatgtgcacttccgttatcattttagt 2786330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 343
Target Start/End: Complemental strand, 24753603 - 24753539
Alignment:
Q  279 tgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 343  Q
    ||||||||||| |||||||||| ||||||| ||  ||||||| || | |||||||| ||||||||    
T  24753603 tgaatgtgcacttctgttatcactttagtcattcgcgttaaataattttgttaactgatgatgtg 24753539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 194 - 322
Target Start/End: Complemental strand, 26652731 - 26652603
Alignment:
Q  194 ttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatct 293  Q
    |||||||||||||||||| ||||| |||||||||| |||||||||| ||||||||| |||| |||||||| ||||||||||||| |||||||| |  |||    
T  26652731 ttgagtaaatagtcacttgggtccctgactttgcatctcgctgtcactttagtccctgacttaggataaaatacaaaatagtccatgaatgtgtatctct 26652632  T
Q  294 gttatcagtttagtccttaccgttaaaaa 322  Q
    |||||||||||||||||||| ||||||||    
T  26652631 gttatcagtttagtccttactgttaaaaa 26652603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 186 - 369
Target Start/End: Original strand, 27823717 - 27823900
Alignment:
Q  186 aataatttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgt 285  Q
    |||||||| |||| ||||||||| |||  ||||||| ||| |||||  ||||||||||| || ||||  ||||||||| ||||| | |||| ||||||||    
T  27823717 aataatttatgaggaaatagtcattttaatccttgattttacacctaactgtcattttaatctccgatccaggataaaatacaataaagtctttgaatgt 27823816  T
Q  286 gcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 369  Q
      |  ||||||||| ||||||| ||||||||||||||  | |||||| |  |||||||||||| ||| ||| ||||||||||||    
T  27823817 ctatctctgttatcggtttagttcttaccgttaaaaacttctgttaaatggtgatgtgtcaattataaggatcaaattgaaagt 27823900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 251 - 346
Target Start/End: Complemental strand, 40207008 - 40206912
Alignment:
Q  251 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagt-ccttaccgttaaaaaactatgttaactcatgatgtgtca 346  Q
    |||||| ||| || || ||| |||||||||||||||||  || |||||||||||||| ||||| |||||||||| |||||||||| |||| ||||||    
T  40207008 gactcatgattaagtataaattagtccttgaatgtgcatttccgttatcagtttagtcccttaacgttaaaaaattatgttaactgatgaggtgtca 40206912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 323
Target Start/End: Original strand, 17700510 - 17700643
Alignment:
Q  190 atttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcac 289  Q
    ||||| ||| ||||||||||||| ||| |||||| ||||||||| |||||  |  || || |||||||||| || ||||||  ||||| ||| | |||||    
T  17700510 attttagagcaaatagtcactttagtctttgactctgcacctcgttgtcacataggttcctgactcaggattaaatacaaataagtccctgactctgcac 17700609  T
Q  290 atctgttatcagtttagtccttaccgttaaaaaa 323  Q
     || ||||||| |||||||| |  ||||||||||    
T  17700610 ttccgttatcactttagtccctgacgttaaaaaa 17700643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 369
Target Start/End: Original strand, 30270735 - 30270808
Alignment:
Q  296 tatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 369  Q
    |||||||||| || ||||||||||| |  | ||||||||  |||||||||||||||| |||||||||| |||||    
T  30270735 tatcagtttaatctttaccgttaaacacttctgttaactggtgatgtgtcaatcataaggaccaaattaaaagt 30270808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 339
Target Start/End: Original strand, 40205950 - 40206023
Alignment:
Q  266 acaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatga 339  Q
    ||||| |||||  ||||||||||| || ||||||||||||||| ||  |||||||||| |||||||||| ||||    
T  40205950 acaaagtagtctctgaatgtgcacttccgttatcagtttagtcattggcgttaaaaaattatgttaactaatga 40206023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 47118177 - 47118112
Alignment:
Q  195 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggat 260  Q
    |||| |||| |||||||| |||| ||||| ||||||||| |||||| | |||||||||||||||||    
T  47118177 tgagcaaatggtcactttagtccctgactctgcacctcgttgtcatataagtccccgactcaggat 47118112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 191 - 332
Target Start/End: Original strand, 48572978 - 48573119
Alignment:
Q  191 tttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcaca 290  Q
    ||||| || |||||||||||||||||| ||||| ||||||||| | |||  |  ||||| |||||||||| || ||||||  || |  ||| | |||||     
T  48572978 ttttttagcaaatagtcactttggtccctgactctgcacctcgttatcacataggtccctgactcaggattaaatacaaataagcctctgactctgcact 48573077  T
Q  291 tctgttatcagtttagtccttaccgttaaaaaactatgttaa 332  Q
    || ||||||| ||||||||||  |||||||||| | ||||||    
T  48573078 tccgttatcactttagtccttgacgttaaaaaaatttgttaa 48573119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 323
Target Start/End: Complemental strand, 17702045 - 17701917
Alignment:
Q  195 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 294  Q
    |||||||||||||||||| |||  ||| | |||| ||||||||||| |  ||||| |||||| ||| || ||||||  ||||| ||| | ||||| || |    
T  17702045 tgagtaaatagtcactttagtctctgattctgcagctcgctgtcatataggtccctgactcaagattaaatacaaataagtccctgactctgcacttccg 17701946  T
Q  295 ttatcagtttagtccttaccgttaaaaaa 323  Q
    |||||| |||||||| |  ||||||||||    
T  17701945 ttatcactttagtccctgacgttaaaaaa 17701917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 20464586 - 20464543
Alignment:
Q  196 gagtaaatagtcactttggtccttgactttgcacctcgctgtca 239  Q
    ||||||||||||||||| |||||||||| ||||||| |||||||    
T  20464586 gagtaaatagtcactttagtccttgactctgcaccttgctgtca 20464543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 341
Target Start/End: Complemental strand, 52318443 - 52318297
Alignment:
Q  195 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 294  Q
    |||| |||||||||||||||||  ||||| ||||| |||||||||  |   |||| |||||||||| || ||||||  ||||| ||| | ||||| ||||    
T  52318443 tgagcaaatagtcactttggtctctgactctgcacttcgctgtcacatagatccctgactcaggattaaatacaaataagtccctgactctgcacttctg 52318344  T
Q  295 ttatcagtttagtccttaccgttaaaaaactatgttaactcatgatg 341  Q
     ||| | |||||||| |  |||||||||| | |||||| | ||||||    
T  52318343 atattactttagtccctgacgttaaaaaaatctgttaagtgatgatg 52318297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 302
Target Start/End: Original strand, 40317838 - 40317874
Alignment:
Q  266 acaaaatagtccttgaatgtgcacatctgttatcagt 302  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  40317838 acaaagtagtccttgaatgtgcacttctgttatcagt 40317874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 196 - 369
Target Start/End: Complemental strand, 8484331 - 8484158
Alignment:
Q  196 gagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgt 295  Q
    |||||||||||||||||||||  ||| ||||||||||| ||||| | |||| ||||||| | ||||||||| |||||||||| |||||||| | || |||    
T  8484331 gagtaaatagtcactttggtctctgattttgcacctcgttgtcactctagttcccgacttaagataaactataaaatagtccatgaatgtgtaaatttgt 8484232  T
Q  296 tatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 369  Q
    |||||||||||| |||||||||||||   | |||||||    |||||||||||||||||||| |||||||||||    
T  8484231 tatcagtttagtacttaccgttaaaattttctgttaaccgcagatgtgtcaatcatagggactaaattgaaagt 8484158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 186 - 369
Target Start/End: Complemental strand, 8077731 - 8077545
Alignment:
Q  186 aataatttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgt 285  Q
    |||||||| |||||||||||||| ||||||||   ||||| ||||||| ||||| ||||||| ||||||||||||||| || |||||| |   |||||||    
T  8077731 aataatttatgagtaaatagtcattttggtccccaactttacacctcgttgtcactttagtctccgactcaggataaattataaaataatttctgaatgt 8077632  T
Q  286 gcacatctgttatcagtttagtcctt---accgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 369  Q
    | | |||||||||| |||||||||||   |||||| ||||| |||||||||   ||||||||||||||||| ||||||||| |||||    
T  8077631 gtagatctgttatctgtttagtccttataaccgttgaaaaattatgttaacgactgatgtgtcaatcatagagaccaaattaaaagt 8077545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 194 - 314
Target Start/End: Original strand, 8075482 - 8075601
Alignment:
Q  194 ttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatct 293  Q
    |||||||||||||||||| ||||||||||||| ||||  | ||| | ||||||| |||||| | |||||||||||||||| |||||||||||| | ||||    
T  8075482 ttgagtaaatagtcactt-ggtccttgactttacaccatgttgttactttagtctccgacttatgataaactacaaaataatccttgaatgtgtagatct 8075580  T
Q  294 gttatcagtttagtccttacc 314  Q
    |||||||||||||||||||||    
T  8075581 gttatcagtttagtccttacc 8075601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 196 - 343
Target Start/End: Original strand, 48646047 - 48646194
Alignment:
Q  196 gagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgt 295  Q
    |||||||||||||||||||||| ||||| |||||||||||||||  |  ||||| |||||||||| || ||||||  ||||| ||| | | ||| || ||    
T  48646047 gagtaaatagtcactttggtccctgactatgcacctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctacacttccgt 48646146  T
Q  296 tatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 343  Q
    ||||| |||||||  |  |||||||||| ||| |||| | ||||||||    
T  48646147 tatcactttagtctctgtcgttaaaaaaatatattaagtgatgatgtg 48646194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 343
Target Start/End: Original strand, 35727693 - 35727843
Alignment:
Q  192 ttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacat 291  Q
    ||||||| ||| |||||||||| ||| ||||| |||||||||||||||  |  ||||| |||||||||| || || |||  ||||  ||| | |||||||    
T  35727693 ttttgagcaaacagtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatataaataagtctctgactctgcacat 35727792  T
Q  292 ctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 343  Q
    | ||||||| ||||||||| | ||||||||| || |||||| | ||||||||    
T  35727793 ccgttatcactttagtcctga-cgttaaaaatctctgttaagtgatgatgtg 35727843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 342
Target Start/End: Original strand, 7258272 - 7258419
Alignment:
Q  195 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 294  Q
    |||| |||||||||||||||||| ||||| | ||||||| |||||  |  |||||  ||||||||| || ||||||  ||||  ||| | ||||| ||||    
T  7258272 tgagcaaatagtcactttggtccctgactctacacctcgttgtcacataggtccctaactcaggattaaatacaaataagtctctgactctgcacttctg 7258371  T
Q  295 ttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgt 342  Q
    |||||| |||||||| |  |||||||||| | |||||| | |||||||    
T  7258372 ttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 7258419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 239
Target Start/End: Complemental strand, 48788793 - 48788754
Alignment:
Q  200 aaatagtcactttggtccttgactttgcacctcgctgtca 239  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  48788793 aaatagtcactttgatccttgactttgcacctcgctgtca 48788754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 343
Target Start/End: Original strand, 44333141 - 44333282
Alignment:
Q  200 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatc 299  Q
    |||||||||||||||||| ||||| |||||||||||||||  |  ||||| |||||| ||| || ||||||  ||||  ||| | ||||| || ||||||    
T  44333141 aaatagtcactttggtccctgactctgcacctcgctgtcacataggtccctgactcatgattaaatacaaataagtctctgactctgcacttccgttatc 44333240  T
Q  300 agtttagtccttaccgttaaaaaactatgttaactcatgatgtg 343  Q
    |   ||||||||  |||||||||| | |||||| | ||||||||    
T  44333241 a--ctagtccttgacgttaaaaaaatctgttaagtgatgatgtg 44333282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 346
Target Start/End: Original strand, 384934 - 385001
Alignment:
Q  279 tgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtca 346  Q
    ||||||||||| || ||| |||||||||||  ||||||||||||| ||||||| || |||| ||||||    
T  384934 tgaatgtgcacttccgttctcagtttagtctctaccgttaaaaaattatgttagctaatgaggtgtca 385001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 385739 - 385693
Alignment:
Q  193 tttgagtaaatagtcactttggtccttgactttgcacctcgctgtca 239  Q
    ||||||||||| ||||||||||||||||||| |||| |||| |||||    
T  385739 tttgagtaaatggtcactttggtccttgactctgcatctcgttgtca 385693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 21062813 - 21062859
Alignment:
Q  194 ttgagtaaatagtcactttggtccttgactttgcacctcgctgtcat 240  Q
    ||||| |||| |||||||| |||| ||||||||||||||||||||||    
T  21062813 ttgagaaaatggtcactttagtccctgactttgcacctcgctgtcat 21062859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 10899199 - 10899155
Alignment:
Q  195 tgagtaaatagtcactttggtccttgactttgcacctcgctgtca 239  Q
    ||||||||| || |||||||||| ||||| |||||||||||||||    
T  10899199 tgagtaaattgttactttggtccctgactctgcacctcgctgtca 10899155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 308
Target Start/End: Original strand, 24844627 - 24844683
Alignment:
Q  252 actcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtc 308  Q
    ||||||||| || |||||| ||||| |||||||||||| ||  ||||||||||||||    
T  24844627 actcaggattaaatacaaagtagtcattgaatgtgcacttccattatcagtttagtc 24844683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 195 - 323
Target Start/End: Complemental strand, 32766365 - 32766237
Alignment:
Q  195 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 294  Q
    |||| |||||||||||||||||| ||||| ||||||||| |||||  |  ||||| |||||||||| || ||||||  ||||| ||| | ||||| || |    
T  32766365 tgagcaaatagtcactttggtccctgactctgcacctcgttgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccg 32766266  T
Q  295 ttatcagtttagtccttaccgttaaaaaa 323  Q
    |||||| ||||||||||  ||||||||||    
T  32766265 ttatcactttagtccttgacgttaaaaaa 32766237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 200 - 343
Target Start/End: Complemental strand, 31091648 - 31091505
Alignment:
Q  200 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatc 299  Q
    |||||||||||||||||| ||||| ||||||| |||||||  |  ||||| |||||||||| || ||||||  ||||| ||| | ||||| || ||||||    
T  31091648 aaatagtcactttggtccctgactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatc 31091549  T
Q  300 agtttagtccttaccgttaaaaaactatgttaactcatgatgtg 343  Q
    | |||||||  |  |||||||||| |||||||| | ||||||||    
T  31091548 actttagtctctgacgttaaaaaaatatgttaagtgatgatgtg 31091505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 195 - 308
Target Start/End: Original strand, 8420010 - 8420123
Alignment:
Q  195 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 294  Q
    ||||||||| ||||||||||||| ||||| ||||  |||| ||||     ||||| || ||| ||| || |||||| |||||| ||||||||||| ||||    
T  8420010 tgagtaaatggtcactttggtccctgactctgcatttcgcggtcacaaatgtccctgagtcaagattaaatacaaagtagtccctgaatgtgcacttctg 8420109  T
Q  295 ttatcagtttagtc 308  Q
    ||||||||||||||    
T  8420110 ttatcagtttagtc 8420123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 309
Target Start/End: Complemental strand, 12746329 - 12746213
Alignment:
Q  193 tttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatc 292  Q
    ||||||||||| ||||||||||| ||||||| |||||||||| ||| |    || || |||||||||| || |||||| |||| | ||||||||| | ||    
T  12746329 tttgagtaaatggtcactttggttcttgactctgcacctcgcagtcttaaaggttcctgactcaggattaaatacaaagtagttcctgaatgtgcccttc 12746230  T
Q  293 tgttatcagtttagtcc 309  Q
     ||||||| ||||||||    
T  12746229 cgttatcactttagtcc 12746213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 343
Target Start/End: Complemental strand, 15442041 - 15441949
Alignment:
Q  251 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 343  Q
    |||||||||| || |||||| |||||||||||||||||| | | |||||| |||||||  ||  |||||| || | |||||||| ||||||||    
T  15442041 gactcaggattaaatacaaagtagtccttgaatgtgcacttttattatcactttagtctctagtgttaaataattttgttaactgatgatgtg 15441949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 339
Target Start/End: Original strand, 38853808 - 38853896
Alignment:
Q  251 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatga 339  Q
    |||||||||| || |||||| |||||| | ||||||||| || ||||||| |||||||  |  ||||||| || |||||||||||||||    
T  38853808 gactcaggattaaatacaaagtagtccctaaatgtgcacttccgttatcaatttagtcactgacgttaaataattatgttaactcatga 38853896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 230
Target Start/End: Original strand, 5428361 - 5428393
Alignment:
Q  198 gtaaatagtcactttggtccttgactttgcacc 230  Q
    |||||| ||||||||||||||||||||||||||    
T  5428361 gtaaatggtcactttggtccttgactttgcacc 5428393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 14705177 - 14705129
Alignment:
Q  191 tttttgagtaaatagtcactttggtccttgactttgcacctcgctgtca 239  Q
    |||| ||| ||||||||||||||||||  |||| |||||||||||||||    
T  14705177 ttttagagcaaatagtcactttggtcccggactctgcacctcgctgtca 14705129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 343
Target Start/End: Original strand, 32764935 - 32765082
Alignment:
Q  195 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 294  Q
    |||||||||||||||||| |||| ||| | |||| || | |||||| |  ||| | |||||||||| || ||||||  ||||| ||| | ||||| || |    
T  32764935 tgagtaaatagtcactttagtccctgattctgcagctagttgtcatataggtctctgactcaggattaaatacaaataagtccctgactctgcacttccg 32765034  T
Q  295 ttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 343  Q
    |||||| |||| ||| |  |||||||||| |||||||| | ||||||||    
T  32765035 ttatcactttaatccctgacgttaaaaaa-tatgttaagtgatgatgtg 32765082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 191 - 308
Target Start/End: Complemental strand, 9538179 - 9538062
Alignment:
Q  191 tttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcaca 290  Q
    |||| ||| |||||||||||||||||| ||||| |||| |||| |||||| |  ||||| |||||||||| || ||||||  ||||  ||| |||||||     
T  9538179 ttttagagcaaatagtcactttggtccctgactctgcatctcgttgtcatataggtccctgactcaggattaaatacaaagaagtctctgattgtgcact 9538080  T
Q  291 tctgttatcagtttagtc 308  Q
    || ||||||| |||||||    
T  9538079 tccgttatcattttagtc 9538062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 24900462 - 24900414
Alignment:
Q  191 tttttgagtaaatagtcactttggtccttgactttgcacctcgctgtca 239  Q
    |||||||| |||||||||||||||||| ||||| |||||||||||||||    
T  24900462 tttttgagcaaatagtcactttggtccctgactctgcacctcgctgtca 24900414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 343
Target Start/End: Original strand, 4592863 - 4593006
Alignment:
Q  200 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatc 299  Q
    ||||||||||||| |||| ||| | || | ||||||||||  | |||||| |||||| ||| || ||||||  ||||| ||| | ||||| || ||||||    
T  4592863 aaatagtcactttagtccctgattatgtagctcgctgtcacataagtccctgactcaagattaaatacaaataagtccctgactctgcacttccgttatc 4592962  T
Q  300 agtttagtccttaccgttaaaaaactatgttaactcatgatgtg 343  Q
    | |||||||| |  |||||||||| | |||||| | ||||||||    
T  4592963 actttagtccctgacgttaaaaaaatctgttaagtgatgatgtg 4593006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 307
Target Start/End: Original strand, 8074453 - 8074560
Alignment:
Q  200 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatc 299  Q
    ||||||||||||| |||| ||| | |||| ||||||||||  | |||||| |||||||||| || ||||||  ||||| ||| | ||||| || ||||||    
T  8074453 aaatagtcactttagtccctgattatgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatc 8074552  T
Q  300 agtttagt 307  Q
    | ||||||    
T  8074553 actttagt 8074560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 343
Target Start/End: Original strand, 19182952 - 19183095
Alignment:
Q  200 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatc 299  Q
    ||||||| ||||| |  |||||||||||||||||||||||  |  ||| | |||||||||| || ||||||  ||| | ||| | | ||| || ||||||    
T  19182952 aaatagttactttagaacttgactttgcacctcgctgtcacataggtctctgactcaggattaaatacaaataagttcctgactctacacttccgttatc 19183051  T
Q  300 agtttagtccttaccgttaaaaaactatgttaactcatgatgtg 343  Q
    | |||||||||| |  |||||||| |||||||| | ||||||||    
T  19183052 actttagtccttgcgattaaaaaaatatgttaagtgatgatgtg 19183095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 339
Target Start/End: Original strand, 19271416 - 19271483
Alignment:
Q  272 tagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatga 339  Q
    |||||||| ||||||||| || |||||||||||||||| |  |||||||||  |||||||||| ||||    
T  19271416 tagtcctttaatgtgcacttccgttatcagtttagtccatgacgttaaaaatttatgttaactaatga 19271483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 16978988 - 16979030
Alignment:
Q  194 ttgagtaaatagtcactttggtccttgactttgcacctcgctg 236  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||    
T  16978988 ttgagtagatagtcactttagtccttgactttgcaccttgctg 16979030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 270
Target Start/End: Complemental strand, 28591235 - 28591165
Alignment:
Q  200 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaa 270  Q
    |||||||||||||| ||| ||||| |||||||||||||||  |  ||||| |||||||||| || ||||||    
T  28591235 aaatagtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatacaaa 28591165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 14891270 - 14891225
Alignment:
Q  194 ttgagtaaatagtcactttggtccttgactttgcacctcgctgtca 239  Q
    ||||| |||||||||||||||||| | ||| |||||||||||||||    
T  14891270 ttgagcaaatagtcactttggtccctcactctgcacctcgctgtca 14891225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 290
Target Start/End: Original strand, 23772809 - 23772902
Alignment:
Q  197 agtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcaca 290  Q
    ||||||| ||||||||| ||  ||||||||||||||||| ||||   |||||| ||| || ||| || |||||| |||| | ||||||||||||    
T  23772809 agtaaatggtcactttgatctctgactttgcacctcgctatcataaaagtccctgacacaagattaaatacaaagtagttcctgaatgtgcaca 23772902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 339
Target Start/End: Complemental strand, 26327142 - 26327054
Alignment:
Q  251 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatga 339  Q
    |||||||||| || || ||||||  ||||| |||||||| || || |||||||||||||||  |||||||||  | |||||||| ||||    
T  26327142 gactcaggattaaatataaaataacccttggatgtgcacttccgtaatcagtttagtccttgacgttaaaaatttctgttaactgatga 26327054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 254 - 339
Target Start/End: Complemental strand, 50107270 - 50107185
Alignment:
Q  254 tcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatga 339  Q
    ||||||| || ||||||||||||  ||||||||||| || ||||||| ||||||||||  ||||||| || |||||||||| ||||    
T  50107270 tcaggattaaatacaaaatagtctctgaatgtgcacttccgttatcactttagtccttggcgttaaataattatgttaactgatga 50107185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 309
Target Start/End: Complemental strand, 11060910 - 11060796
Alignment:
Q  195 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 294  Q
    ||||||||| ||||||||| ||||||||| |||||||||||||||     ||||  ||||||  || || ||||||||||||| |||||| |||| |  |    
T  11060910 tgagtaaatggtcactttgatccttgactatgcacctcgctgtcacaaaggtccatgactcaaaattaaatacaaaatagtccctgaatgggcactttcg 11060811  T
Q  295 ttatcagtttagtcc 309  Q
    |||||| ||||||||    
T  11060810 ttatcactttagtcc 11060796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 194 - 343
Target Start/End: Complemental strand, 7945681 - 7945532
Alignment:
Q  194 ttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatct 293  Q
    ||||| ||||| ||| |||||||| ||||| |||||||||||||||  |  || || |||||||||| || ||||||  ||||  ||| | ||||| ||     
T  7945681 ttgagcaaataatcattttggtccctgactctgcacctcgctgtcacataggttcctgactcaggattaaatacaaataagtctctgactatgcacttcc 7945582  T
Q  294 gttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 343  Q
    ||||||| |||||||| |  |||||||||| |||| ||| | ||||||||    
T  7945581 gttatcactttagtccctgacgttaaaaaaatatgctaagtgatgatgtg 7945532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 308
Target Start/End: Original strand, 1001207 - 1001264
Alignment:
Q  251 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtc 308  Q
    ||||| |||| || |||||| |||||  ||||||||||| ||||||||||||||||||    
T  1001207 gactcgggattaaatacaaagtagtctctgaatgtgcacttctgttatcagtttagtc 1001264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 343
Target Start/End: Complemental strand, 534569 - 534517
Alignment:
Q  291 tctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 343  Q
    |||||||||| |||||||| ||||||||||||| | |||||| | ||||||||    
T  534569 tctgttatcactttagtccctaccgttaaaaaaatctgttaagttatgatgtg 534517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 308
Target Start/End: Complemental strand, 12676595 - 12676483
Alignment:
Q  196 gagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgt 295  Q
    |||||||||||||||||| |   ||||| ||||||||| |||||   | ||| | | |||||||| || |||||| |||||  | ||||||||| | |||    
T  12676595 gagtaaatagtcactttgatatctgactctgcacctcgttgtcacaatggtctctgtctcaggattaaatacaaagtagtctctaaatgtgcacttttgt 12676496  T
Q  296 tatcagtttagtc 308  Q
    |||||||||||||    
T  12676495 tatcagtttagtc 12676483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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