View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3328_high_22 (Length: 239)
Name: NF3328_high_22
Description: NF3328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3328_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 8038865 - 8038643
Alignment:
| Q |
1 |
cttataactcttaagccaaatacaaattaacaggctacactatcctttggaaattaaatacgatgtccaaaagaatttccaatagactaataaagaaaaa |
100 |
Q |
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| T |
8038865 |
cttataactcttaagccaaatacaaattaacaggctacactatcctttggaaattaaatacgatgtccagaagaatttccaatagactaataaagaaaaa |
8038766 |
T |
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| Q |
101 |
gctatagagaattttaggagcttttttccaagtatcattggattcatttcttatgcattgagctcttcttttactcatctttttgtgaagaacttattga |
200 |
Q |
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| T |
8038765 |
gctatagagaattttaggagcttttttccaagtatcattggattcatttcttatgcattgagctcttcttttactcatctttttgtgaagaacttattga |
8038666 |
T |
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| Q |
201 |
gacactatagaaaggtaacacat |
223 |
Q |
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| T |
8038665 |
gacactatagaaaggtaacacat |
8038643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 91 - 168
Target Start/End: Original strand, 8414340 - 8414416
Alignment:
| Q |
91 |
taaagaaaaagctatagagaattttaggagcttttttccaagtatcattggattcatttcttatgcattgagctcttc |
168 |
Q |
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| T |
8414340 |
taaagaaaaagctatggagaattttaggagtttttttc-aagtatcattggattcatttcttatgcattgagctcttc |
8414416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 71 - 185
Target Start/End: Original strand, 31495789 - 31495901
Alignment:
| Q |
71 |
aagaatttccaatagactaataaagaaaaagctatagagaattttaggagcttttttccaagtatcattggattcatttcttatgcattgagctcttctt |
170 |
Q |
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| T |
31495789 |
aagaatttccaatagactaatacagaaaaatcaatggagaattttagga--tttttttcaagtattatgggattcatttcttatgcaagcagctcttctt |
31495886 |
T |
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| Q |
171 |
ttactcatctttttg |
185 |
Q |
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| T |
31495887 |
tcaatcatctttttg |
31495901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 171
Target Start/End: Original strand, 40844231 - 40844350
Alignment:
| Q |
50 |
gaaattaaatacgatgtccaaaagaatttccaatagactaataaagaaaaagctatagagaattttaggagcttttttccaagtatcattggattcattt |
149 |
Q |
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| T |
40844231 |
gaaattaagtactatgcccataagaatttccaatagactaatactgataaatcactggagaatattagga--tttttttcaagtatcattggattcactt |
40844328 |
T |
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| Q |
150 |
cttatgcattgagctcttcttt |
171 |
Q |
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| T |
40844329 |
cttatgcattcagctcttcttt |
40844350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 171
Target Start/End: Complemental strand, 31325331 - 31325229
Alignment:
| Q |
67 |
ccaaaagaatttccaatagactaataaagaaaaagctatagagaattttaggagcttttttccaagtatcattggattcatttcttatgcattgagctct |
166 |
Q |
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||||||||||||||||||||| || ||| ||||| || ||||||| ||| |||||| |||||||||||||| |||||||||||||||| |||||| |
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| T |
31325331 |
ccaaaagaatttccaatagacatattcagataaagcaatgaagaatttc-gga-ctttttatcaagtatcattggactcatttcttatgcattaagctct |
31325234 |
T |
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| Q |
167 |
tcttt |
171 |
Q |
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||||| |
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| T |
31325233 |
tcttt |
31325229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 31372702 - 31372660
Alignment:
| Q |
129 |
caagtatcattggattcatttcttatgcattgagctcttcttt |
171 |
Q |
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| T |
31372702 |
caagtatcattggactcatttcttatgcattaagctcttcttt |
31372660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 31477069 - 31477131
Alignment:
| Q |
122 |
ttttttccaagtatcattggattcatttcttatgcattgagctcttcttttactcatcttttt |
184 |
Q |
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|||||| |||||||||| ||||| |||||||||| | ||||||||||||| |||||||||| |
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| T |
31477069 |
tttttttcaagtatcatcggattgatttcttatgtaagtagctcttcttttaatcatcttttt |
31477131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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