View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3328_high_3 (Length: 434)
Name: NF3328_high_3
Description: NF3328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3328_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 49766789 - 49766414
Alignment:
| Q |
1 |
ttgtcctactaaaaatgaaaatcatggtaaacattaccaccatgaatactattctagaaaaactcgtattccttttctcttagctaagagaaagaagaag |
100 |
Q |
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| T |
49766789 |
ttgtcctactaaaaatgaaaatcatggtaaacattaccaccatgaatactattctagaaaaactcgtattccttttctcttagctaagaaaaagaagaag |
49766690 |
T |
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| Q |
101 |
aaaacctctgtttctgcatctgctacgacgtctaatatcattttgaaacgtagcaaatcaactgcaacaccaagaagaggtagtaactctatggttgatg |
200 |
Q |
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| T |
49766689 |
aaaacctctgtttctgcatctgctacgtcgtctaatatcattttgaaacgtagcaaatcaactgcaacaccaagaagaggtagtaactctatggttgatg |
49766590 |
T |
|
| Q |
201 |
cagatgatgaatattttagtccaagaaaaagaaatgggttttggtcttttctctatcattcttcaaaatcttcaacttcttccaagagctttagtaatac |
300 |
Q |
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| T |
49766589 |
cagatgatgaatattttagtccaagaaaaagaaatgggttttggtcttttctctatcattcttcaaaatcttcaacttcttccaagagctttagtaatac |
49766490 |
T |
|
| Q |
301 |
tactgcttcagctaagcttaaggaaaagtgttgttcaggttcttctttaggaagaaagaacgacattgttattgtt |
376 |
Q |
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| T |
49766489 |
tactgcttcagctaagcttaaggaaaagtgttgttcaggttcttctttaggaagaaagaacgacattgttattgtt |
49766414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 424
Target Start/End: Complemental strand, 49766396 - 49766366
Alignment:
| Q |
394 |
taacagtcctaatagcaacaacacaggttct |
424 |
Q |
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| T |
49766396 |
taacagtcctaatagcaacaacacaggttct |
49766366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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