View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3328_high_6 (Length: 381)
Name: NF3328_high_6
Description: NF3328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3328_high_6 |
 | |
|
| [»] scaffold0264 (1 HSPs) |
| | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 372
Target Start/End: Original strand, 20205352 - 20205705
Alignment:
| Q |
19 |
cttgagcaattataggaaagataaaatgattcttctgaaagtttagaatcttgtttggaatcatttgttcgaggagctagctcatttggtgaaagaacag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20205352 |
cttgagcaattataggaaagataaaatgattcttctgaaagtttagaatcttgtttggaatcatttgttcgaggagctagctcatttggtgaaagaacag |
20205451 |
T |
|
| Q |
119 |
taatagacctataaaatggatataattcataccttacattacagctaggataaagaaatctccctcccacctttccatcacaactctttgaaactttctc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20205452 |
taatagacctataaaatggatataattcataccttacattacagctaggataaagaaatctccctcccacctttccatcacaactctttgaaactttctc |
20205551 |
T |
|
| Q |
219 |
aatagcactactgagacagtttctgcaatcattaggcgacaaatccggcgtgcactgagctagacagtaaagggtctgattttccgaatcttgtgcttct |
318 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20205552 |
aatagcactactgagacaggttctgcaatcattaggcgacaaatccggcgtgcactgagctagacagtaaagggtctgattttccgaatcttgtgcttct |
20205651 |
T |
|
| Q |
319 |
ttggttgcaaacttctcgtttttgtcaccaataagtggacttgctgcttcatct |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20205652 |
ttggttgcaaacttctcgtttttgtcaccaataagtggacttgctgcttcatct |
20205705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 372
Target Start/End: Original strand, 22099375 - 22099728
Alignment:
| Q |
19 |
cttgagcaattataggaaagataaaatgattcttctgaaagtttagaatcttgtttggaatcatttgttcgaggagctagctcatttggtgaaagaacag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22099375 |
cttgagcaattataggaaagataaaatgattcttctgaaagtttagaatcttgtttggaatcatttgttcgaggagctagctcatttggtgaaagaacag |
22099474 |
T |
|
| Q |
119 |
taatagacctataaaatggatataattcataccttacattacagctaggataaagaaatctccctcccacctttccatcacaactctttgaaactttctc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22099475 |
taatagacctataaaatggatataattcataccttacattacagctaggataaagaaatctccctcccacctttccatcacaactctttgaaactttctc |
22099574 |
T |
|
| Q |
219 |
aatagcactactgagacagtttctgcaatcattaggcgacaaatccggcgtgcactgagctagacagtaaagggtctgattttccgaatcttgtgcttct |
318 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22099575 |
aatagcactactgagacaggttctgcaatcattaggcgacaaatccggcgtgcactgagctagacagtaaagggtctgattttccgaatcttgtgcttct |
22099674 |
T |
|
| Q |
319 |
ttggttgcaaacttctcgtttttgtcaccaataagtggacttgctgcttcatct |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22099675 |
ttggttgcaaacttctcgtttttgtcaccaataagtggacttgctgcttcatct |
22099728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 368
Target Start/End: Original strand, 21971913 - 21972262
Alignment:
| Q |
19 |
cttgagcaattataggaaagataaaatgattcttctgaaagt---ttagaatcttgtttggaatcatttgttcgaggagctagctcatttggtgaaagaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||| ||||||| ||||||||||| ||||||| |
|
|
| T |
21971913 |
cttgagcaattataggaaagataaaatggatcttctgaaagtattttagaatcttgtatggaatcatttgtttgaggagcaagctcatttggggaaagaa |
21972012 |
T |
|
| Q |
116 |
cagtaatagacctataaaatggatataattcataccttacattacagctaggataaagaaatctccctcccacctttccatcacaactctttgaaacttt |
215 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||| |||| || | ||||| | | |
|
|
| T |
21972013 |
cataagtagacctataaaatggatataattcatacctaacattacagctaggataaagaaatctcccaccaacctttccaacacagctttgtgaaagtgt |
21972112 |
T |
|
| Q |
216 |
ctcaatagcactactgagacagtttctgcaatcattaggcgacaaatccggcgtgcactgagctagacagtaaagggtctgattttccgaatcttgtgct |
315 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| || ||||| |
|
|
| T |
21972113 |
ctcaatagcactagtgagacaggttctgcaatcattaggcgacaaatccagcgtgcactgagctagactgtaaagggtctgattttccgaaactcgtgct |
21972212 |
T |
|
| Q |
316 |
tctttggttgcaaacttctcgtttttgtcaccaataagtggacttgctgcttc |
368 |
Q |
| |
|
||||| ||||||||||| ||| ||||||||| |||| |||||||||||||| |
|
|
| T |
21972213 |
tcttttgttgcaaactt---gttcttgtcaccactaagcggacttgctgcttc |
21972262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 19 - 368
Target Start/End: Original strand, 20086032 - 20086381
Alignment:
| Q |
19 |
cttgagcaattataggaaagataaaatgattcttctgaaagtttagaatcttgtttggaatcatttgttcgaggagctagctcatttggtgaaagaacag |
118 |
Q |
| |
|
||||||||||||||||||||||||| || |||| ||||| | |||||||||| || |||| ||||||| ||||| | ||||||||||| ||| || || |
|
|
| T |
20086032 |
cttgagcaattataggaaagataaattggatcttgtgaaaatctagaatcttggtttgaatgatttgtttgaggaacaagctcatttggcgaaggagcat |
20086131 |
T |
|
| Q |
119 |
taatagacctataaaatggatataattcataccttacattacagctaggataaagaaatctccctcccacctttccatcacaactctttgaaactttctc |
218 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||| |||||| ||||||||||||||||||| | | || |||||| |
|
|
| T |
20086132 |
taatagacctataaaaaggatataattcatacctaacattacagctaggaaaaagaactctcccacccacctttccatcacaacagctaggaagtttctc |
20086231 |
T |
|
| Q |
219 |
aatagcactactgagacagtttctgcaatcattaggcgacaaatccggcgtgcactgagctagacagtaaagggtctgattttccg-aatcttgtgcttc |
317 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| || ||||| |||||||||||||||||||||||||||||||||||| ||| | |||| | |||||| |
|
|
| T |
20086232 |
aatagcactattgagacaggttctgcaatcaccgggtgacaagtccggcgtgcactgagctagacagtaaagggtctgagattcagaaatcct-tgcttc |
20086330 |
T |
|
| Q |
318 |
tttggttgcaaacttctcgtttttgtcaccaataagtggacttgctgcttc |
368 |
Q |
| |
|
||| || |||||||||| ||| |||||| | ||||||||| ||||||||| |
|
|
| T |
20086331 |
ttttgtggcaaacttcttgttgttgtcagtagtaagtggacctgctgcttc |
20086381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 19 - 368
Target Start/End: Complemental strand, 22205131 - 22204785
Alignment:
| Q |
19 |
cttgagcaattataggaaagataaaatgattcttctgaaagtttagaatcttgtttggaatcatttgttcgaggagctagctcatttggtgaaagaacag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||| | |||||||||| | |||| ||||||| ||||| | ||||||||||||||| || || |
|
|
| T |
22205131 |
cttgagcaattataggaaagataaaatggatcttgtgaaaatctagaatcttgggttgaatgatttgtttgaggaacaagctcatttggtgaaggagcat |
22205032 |
T |
|
| Q |
119 |
taatagacctataaaatggatataattcataccttacattacagctaggataaagaaatctccctcccacctttccatcacaactctttgaaactttctc |
218 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||| | ||||||||||||| ||| || |||| | ||||||||||||||||||| | | || || ||| |
|
|
| T |
22205031 |
taatagacctataaaaaggatatagttcatacctaatattacagctaggaaaaacaactctcgcacccacctttccatcacaacagctaggaagttcctc |
22204932 |
T |
|
| Q |
219 |
aatagcactactgagacagtttctgcaatcattaggcgacaaatccggcgtgcactgagctagacagtaaagggtctgattttccg-aatcttgtgcttc |
317 |
Q |
| |
|
|||||||||| | |||||| ||||||||||| || ||||| |||||||||||||||||||| ||||||||||||||| ||| | |||||| |||||| |
|
|
| T |
22204931 |
aatagcactattaagacaggttctgcaatcaccgggtgacaagtccggcgtgcactgagctaggcagtaaagggtctgagattcagaaatctt-tgcttc |
22204833 |
T |
|
| Q |
318 |
tttggttgcaaacttctcgtttttgtcaccaataagtggacttgctgcttc |
368 |
Q |
| |
|
||| || ||||| ||| || |||||| || ||||||||| ||||||||| |
|
|
| T |
22204832 |
ttttgtggcaaatttc---ttgttgtcagcagtaagtggacctgctgcttc |
22204785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 295
Target Start/End: Complemental strand, 24385343 - 24385068
Alignment:
| Q |
19 |
cttgagcaattataggaaagataaaatgattcttctgaaagtttagaatcttgtttggaatcatttgttcgaggagctagctcatttggtgaaagaacag |
118 |
Q |
| |
|
||||||||||||||||||||||||| || |||| ||||| | ||||||||||||| |||||||||||| ||||| | |||||||||| |||| || || |
|
|
| T |
24385343 |
cttgagcaattataggaaagataaattggatcttgtgaaaatctagaatcttgttttgaatcatttgtttgaggaacaagctcatttgatgaaggagcaa |
24385244 |
T |
|
| Q |
119 |
taatagacctataaaatggatataattcataccttacattacagctaggataaagaaatctccctcccacctttccatcacaactctttgaaactttctc |
218 |
Q |
| |
|
||||||| ||||||| ||| ||| ||||||||| | |||||||||||| || ||| ||| || ||| |||||||||||||| || || || |
|
|
| T |
24385243 |
taatagatttataaaaaggaaatagttcatacctaatgttacagctaggaaaaggaactct-ccaccctgctttccatcacaacatagtggaagagattc |
24385145 |
T |
|
| Q |
219 |
aatagcactactgagacagtttctgcaatcattaggcgacaaatccggcgtgcactgagctagacagtaaagggtct |
295 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||| ||||| || |||||||||||||||| | ||||||| |||| |
|
|
| T |
24385144 |
aatagcactattgagacaggttctgcaatcattaggggacaagtctggcgtgcactgagctaaatagtaaagcgtct |
24385068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 20237945 - 20238216
Alignment:
| Q |
19 |
cttgagcaattataggaaagataaaatgattcttctgaaagtttagaatcttgtttggaatcatttgttcgaggagctagctcatttggtgaaagaacag |
118 |
Q |
| |
|
|||| |||||||| ||||||||||| || |||| || || |||||||||||||| |||||||||||| ||||| | ||||||||| ||||| || || |
|
|
| T |
20237945 |
cttgggcaattatcggaaagataaactggatcttgtgtaaaattagaatcttgttttgaatcatttgtttgaggaacaagctcatttagtgaaggagcat |
20238044 |
T |
|
| Q |
119 |
taatagacctataaaatggatataattcataccttacattacagctaggataaagaaatctccctcccacctttccatcacaactctttgaaactttctc |
218 |
Q |
| |
|
|| |||| |||||||| ||||||| |||||||| | |||||| |||||||| | | |||||| ||| |||||||||| | ||||||| |||| |
|
|
| T |
20238045 |
tagtagatctataaaaaggatatagctcatacctaatattacaactaggatataaatttctcccaccctgctttccatcatacacatttgaaagtttcct |
20238144 |
T |
|
| Q |
219 |
aatagcactactgagacagtttctgcaatcattaggcgacaaatccggcgtgcactgagctagacagtaaag |
290 |
Q |
| |
|
|||||||| || ||| ||| ||||||||||||| |||||| || |||||||||||||||||||||||||| |
|
|
| T |
20238145 |
aatagcacaaccgaggcaggttctgcaatcattgaacgacaagtctggcgtgcactgagctagacagtaaag |
20238216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 22131929 - 22132200
Alignment:
| Q |
19 |
cttgagcaattataggaaagataaaatgattcttctgaaagtttagaatcttgtttggaatcatttgttcgaggagctagctcatttggtgaaagaacag |
118 |
Q |
| |
|
|||| |||||||| ||||||||||| || |||| || || |||||||||||||| |||||||||||| ||||| | ||||||||| ||||| || || |
|
|
| T |
22131929 |
cttgggcaattatcggaaagataaactggatcttgtgtaaaattagaatcttgttttgaatcatttgtttgaggaacaagctcatttagtgaaggagcat |
22132028 |
T |
|
| Q |
119 |
taatagacctataaaatggatataattcataccttacattacagctaggataaagaaatctccctcccacctttccatcacaactctttgaaactttctc |
218 |
Q |
| |
|
|| |||| |||||||| ||||||| |||||||| | |||||| |||||||| | | |||||| ||| |||||||||| | ||||||| |||| |
|
|
| T |
22132029 |
tagtagatctataaaaaggatatagctcatacctaatattacaactaggatataaatttctcccaccctgctttccatcatacacatttgaaagtttcct |
22132128 |
T |
|
| Q |
219 |
aatagcactactgagacagtttctgcaatcattaggcgacaaatccggcgtgcactgagctagacagtaaag |
290 |
Q |
| |
|
|||||||| || ||| ||| ||||||||||||| |||||| || |||||||||||||||||||||||||| |
|
|
| T |
22132129 |
aatagcacaaccgaggcaggttctgcaatcattgaacgacaagtctggcgtgcactgagctagacagtaaag |
22132200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 372
Target Start/End: Original strand, 15981 - 16334
Alignment:
| Q |
19 |
cttgagcaattataggaaagataaaatgattcttctgaaagtttagaatcttgtttggaatcatttgttcgaggagctagctcatttggtgaaagaacag |
118 |
Q |
| |
|
||||||||||||||||||||||||| || |||| ||||| | |||||||||| || |||| ||||||| ||||| | ||||||||||| ||| || || |
|
|
| T |
15981 |
cttgagcaattataggaaagataaattggatcttgtgaaaatctagaatcttggtttgaatgatttgtttgaggaacaagctcatttggcgaaggagcat |
16080 |
T |
|
| Q |
119 |
taatagacctataaaatggatataattcataccttacattacagctaggataaagaaatctccctcccacctttccatcacaactctttgaaactttctc |
218 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||| |||||||||||||| ||||||||||||| ||||||||||||| || || | | || || |
|
|
| T |
16081 |
taatagacctataaaaaggatatagttcatacctaacattacagctaggcaaaagaaatctcccacccacctttccataaccacacagaggaagaagatc |
16180 |
T |
|
| Q |
219 |
aatagcactactgagacagtttctgcaatcattaggcgacaaatccggcgtgcactgagctagacagtaaagggtctgattttccgaatcttgtgcttct |
318 |
Q |
| |
|
||||||| || ||||||| ||||||||| ||||| ||||| || ||||||||||||||||||||||| ||||||||||||| |||| || |||||||| |
|
|
| T |
16181 |
aatagcagtatagagacaggttctgcaattgttaggagacaagtctggcgtgcactgagctagacagtatagggtctgatttttcgaaactcgtgcttct |
16280 |
T |
|
| Q |
319 |
ttggttgcaaacttctcgtttttgtcaccaataagtggacttgctgcttcatct |
372 |
Q |
| |
|
|| ||||||||||||| ||| |||| ||||||||||||| ||||||||||||| |
|
|
| T |
16281 |
tttgttgcaaacttcttttttatgtctccaataagtggacgtgctgcttcatct |
16334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 19 - 372
Target Start/End: Complemental strand, 47957 - 47607
Alignment:
| Q |
19 |
cttgagcaattataggaaagataaaatgattcttctgaaagtttagaatcttgtttggaatcatttgttcgaggagctagctcatttggtgaaagaacag |
118 |
Q |
| |
|
|||| |||||||||||||||||||| || |||| ||||| | ||||||||||||| |||| |||||| ||||| | ||||||||||||||| | |
|
|
| T |
47957 |
cttgggcaattataggaaagataaattggatcttgtgaaaatctagaatcttgttttgaatgttttgtttgaggaacaagctcatttggtgaagtat--- |
47861 |
T |
|
| Q |
119 |
taatagacctataaaatggatataattcataccttacattacagctaggataaagaaatctccctcccacctttccatcacaactctttgaaactttctc |
218 |
Q |
| |
|
| |||||||||||||| ||||||| ||||||||| ||||||||||||||| ||| || |||| ||| |||||||||| || || | || || |
|
|
| T |
47860 |
tgatagacctataaaaaggatatagttcatacctaacattacagctaggaaaaaaaaccatcccaccctgctttccatcaaaaagctgagcaagaaaatc |
47761 |
T |
|
| Q |
219 |
aatagcactactgagacagtttctgcaatcattaggcgacaaatccggcgtgcactgagctagacagtaaagggtctgattttccgaatcttgtgcttct |
318 |
Q |
| |
|
||||||| || ||||||| ||||||||| ||||| ||||| || |||||||||||||||||||||||||||||||| |||| |||| || |||||||| |
|
|
| T |
47760 |
aatagcagtatagagacaggttctgcaattgttaggagacaagtctggcgtgcactgagctagacagtaaagggtctgttttttcgaaactcgtgcttct |
47661 |
T |
|
| Q |
319 |
ttggttgcaaacttctcgtttttgtcaccaataagtggacttgctgcttcatct |
372 |
Q |
| |
|
|| ||||||||||||| ||| | || ||||||||||||| ||||||||||||| |
|
|
| T |
47660 |
tttgttgcaaacttcttttttatatctccaataagtggacgtgctgcttcatct |
47607 |
T |
|
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Target: scaffold0007 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 5484 - 5199
Alignment:
| Q |
19 |
cttgagcaattataggaaagataaaatgattcttctgaaagtttagaatcttgtttggaatcatttgttcgaggagctagctcatttggtgaaagaacag |
118 |
Q |
| |
|
|||||||||||||||||||||||||| | |||| ||||| | ||| ||||||||| |||| |||||| ||||| | ||||||||||||||| | || |
|
|
| T |
5484 |
cttgagcaattataggaaagataaaagggatcttttgaaaatctagtatcttgttttgaatagtttgtttgaggaacaagctcatttggtgaagaagtag |
5385 |
T |
|
| Q |
119 |
ta---atagacctataaaatggatataattcataccttacattacagctaggataaagaaatctccctcccacctttccatcacaactctttgaaacttt |
215 |
Q |
| |
|
|| |||||||||||||| ||||||| ||||||||| | ||||||||||||| ||| || |||||| ||| |||||||||||||| | | | || | |
|
|
| T |
5384 |
tattgatagacctataaaaaggatatagttcatacctaatattacagctaggaaaaacaactctcccaccctcctttccatcacaaaccataggaagata |
5285 |
T |
|
| Q |
216 |
ctcaatagcactactgagacagtttctgcaatcattaggcgacaaatccggcgtgcactgagctagacagtaaagggtctgatttt |
301 |
Q |
| |
|
|||||||| ||| ||||||| ||||||||| ||||| ||||| |||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
5284 |
ttcaatagctctatggagacaggttctgcaattgttaggggacaagtccggcgtgcactgttctagacagtacagggtctgatttt |
5199 |
T |
|
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