View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3328_high_7 (Length: 381)
Name: NF3328_high_7
Description: NF3328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3328_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 127 - 367
Target Start/End: Complemental strand, 39214801 - 39214561
Alignment:
| Q |
127 |
gtagaagtactaaatgtattttaaaaactagaaataagtgaaagaacgtatatgttctatcatatgtagtttaatttggttcgatttgattcgtatagaa |
226 |
Q |
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| T |
39214801 |
gtagaagtactaaatgtattttaaaaactagaaataagtgaaagaacgtatatgttctatcatatgtagtttaatttggttcgatttgattcgtatagaa |
39214702 |
T |
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| Q |
227 |
agaaacaaaacggtggttatataccaactggctctccatttacgagtataaattgatattcctagtatctgatatccaactcatcaaaactaatcatcaa |
326 |
Q |
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| T |
39214701 |
agaaacaaaacggtggttatataccaactggctctccatttacgagtataaattgatattcctagtatctgatatccaactcatcaaaactaatcatcaa |
39214602 |
T |
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| Q |
327 |
aatatcgagtttaagcatcatcgaatagatcataacattaa |
367 |
Q |
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| T |
39214601 |
aatatcgagtttaagcatcatcgaatagatcataacattaa |
39214561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 39214867 - 39214824
Alignment:
| Q |
11 |
cagagattgaacaagtgagactttcgggccatggttcaattagt |
54 |
Q |
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| T |
39214867 |
cagagattgaacaagtgagactttcgggccatggttcaattagt |
39214824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 106
Target Start/End: Complemental strand, 39214822 - 39214792
Alignment:
| Q |
76 |
gaatcagatgactatgaataagtagaagtac |
106 |
Q |
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| T |
39214822 |
gaatcagatgactatgaataagtagaagtac |
39214792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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