View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3328_low_11 (Length: 366)
Name: NF3328_low_11
Description: NF3328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3328_low_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 48 - 215
Target Start/End: Complemental strand, 3658680 - 3658515
Alignment:
| Q |
48 |
caaaggacataaactagtatccataccacatctagatcttttttcattagtcttcaaaccatcattataaagaaggcaaaagaaaaaacattttattctt |
147 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3658680 |
caaaggacataaactagcatccataccacatctagatcttttttcattagtcttcaaaccatcattataaagaaggc-aaagaaaaaacattttattctt |
3658582 |
T |
|
| Q |
148 |
tgaggccctcccatttgagaaaccgtttgtagaagctgatgtgataaaaatggttgatttacaacctc |
215 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
3658581 |
tgaggccctcccatttgaaaaaccgttcttagaaggtgatgtgataaaaatggttga-ttacaacctc |
3658515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 3658360 - 3658305
Alignment:
| Q |
215 |
cccttgatattcaggtcgacacacattcttccaagaaatagaatgccatctacgct |
270 |
Q |
| |
|
||||||||||| ||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
3658360 |
cccttgatatttaggtcgacacacattctccgaagaaatagaatgccatctacgct |
3658305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 3658703 - 3658675
Alignment:
| Q |
15 |
aatatgaagggcggtttacttatcaaagg |
43 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
3658703 |
aatatgaagggcggtttacttatcaaagg |
3658675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University