View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3328_low_12 (Length: 363)
Name: NF3328_low_12
Description: NF3328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3328_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 39214857 - 39215209
Alignment:
| Q |
1 |
ttcaatctctggtccagttttggaaaacattccttctagcacttattgtactctaaaagccttgggagcatctatttggtctccatacttctggtttgac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39214857 |
ttcaatctctggtccagttttggaaaacattccttctagcacttattgtactctaaaagccttgggagcatctatttggtctccatacttctggtttgac |
39214956 |
T |
|
| Q |
101 |
ggttgaaacttgaaaggcttgagagctgttttgtggcatgctcaannnnnnnaatgtggtccaattcataagannnnnnnagcttcctatatgtaacact |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39214957 |
ggttgaaacttgaaaggcttgagagctgttttgtggcatgctcaatttttttaatgtggtccaattcataagattattttagcttcctatatgtaacact |
39215056 |
T |
|
| Q |
201 |
ttctttatattgaagtttgccttgctaattctagagcaaacacttcctatgaagtttgttcaaaatcaatttccccaaaatgcatcttgtcatgtagaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39215057 |
ttctttatattgaagtttgccttgctaattctagagcaaacacttcctatgaagtttgttcaaaatcaatttccccaaaatgcatcttgtcatgtagaac |
39215156 |
T |
|
| Q |
301 |
tcattttctaccacaaacatgttctgcagtgttcattttatcatatgcctatg |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39215157 |
tcattttctaccacaaacatgttctgcagtgttcattttatcatatgcttatg |
39215209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University