View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3328_low_13 (Length: 356)
Name: NF3328_low_13
Description: NF3328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3328_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 27 - 339
Target Start/End: Original strand, 36742935 - 36743247
Alignment:
| Q |
27 |
caatcaaaatcattcaagatgtttccccttttcaagaagaagcaaaagattaagggaacagtggtgttgatgtgcaagaatgcattggatttgaatgata |
126 |
Q |
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| T |
36742935 |
caatcaaaatcattcaagatgtttccccttttcaagaagaagcaaaagattaagggaacagtggtgttgatgtgcaagaatgcattggatttgaatgata |
36743034 |
T |
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| Q |
127 |
ttaaagctggcccttcacttggagctggatttggtcttgttagagacgttgttggtggtgtcattgatggtgctactgctatcttaggccgtagtgttgg |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36743035 |
ttaaagctggcccttcacttggagctggatttggtcttgttagagacgttgttggtggtgtcattgatggtgctactgctatcttaggccgtagtgttgg |
36743134 |
T |
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| Q |
227 |
cctccagttgatcagtgccaccaaaactgacagtaataataatacttacacatataatctctcctctatatatgtcttttcattatatgcttattacatt |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36743135 |
cctccagttgatcagtgccaccaaaactgacagtaataataatacttacacatataatctctcctctatatatgtcttttcattatatgcttattacatt |
36743234 |
T |
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| Q |
327 |
atatatatttgtt |
339 |
Q |
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||||||||||||| |
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| T |
36743235 |
atatatatttgtt |
36743247 |
T |
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